Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04938 and H281DRAFT_04939 are separated by 95 nucleotides H281DRAFT_04939 and H281DRAFT_04940 are separated by 160 nucleotides
H281DRAFT_04938: H281DRAFT_04938 - membrane fusion protein, multidrug efflux system, at 121,896 to 123,038
_04938
H281DRAFT_04939: H281DRAFT_04939 - transcriptional regulator, TetR family, at 123,134 to 123,928
_04939
H281DRAFT_04940: H281DRAFT_04940 - acetylornithine deacetylase, at 124,089 to 125,252
_04940
Position (kb) 123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 122.235 kb on - strand, within H281DRAFT_04938 at 122.241 kb on + strand, within H281DRAFT_04938 at 122.673 kb on + strand, within H281DRAFT_04938 at 122.674 kb on - strand, within H281DRAFT_04938 at 122.674 kb on - strand, within H281DRAFT_04938 at 122.792 kb on - strand, within H281DRAFT_04938 at 122.851 kb on + strand, within H281DRAFT_04938 at 123.053 kb on + strand at 123.054 kb on - strand at 123.103 kb on - strand at 123.104 kb on + strand at 123.118 kb on + strand at 123.309 kb on - strand, within H281DRAFT_04939 at 123.335 kb on + strand, within H281DRAFT_04939 at 124.299 kb on + strand, within H281DRAFT_04940 at 124.299 kb on + strand, within H281DRAFT_04940 at 124.299 kb on + strand, within H281DRAFT_04940 at 124.300 kb on - strand, within H281DRAFT_04940 at 124.300 kb on - strand, within H281DRAFT_04940 at 124.666 kb on + strand, within H281DRAFT_04940 at 124.666 kb on + strand, within H281DRAFT_04940 at 124.852 kb on + strand, within H281DRAFT_04940
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 122,235 - H281DRAFT_04938 0.30 +0.3 122,241 + H281DRAFT_04938 0.30 -0.2 122,673 + H281DRAFT_04938 0.68 +0.1 122,674 - H281DRAFT_04938 0.68 +0.6 122,674 - H281DRAFT_04938 0.68 +0.4 122,792 - H281DRAFT_04938 0.78 -2.0 122,851 + H281DRAFT_04938 0.84 +0.6 123,053 + +0.8 123,054 - -0.6 123,103 - -0.2 123,104 + -0.1 123,118 + -0.8 123,309 - H281DRAFT_04939 0.22 -3.0 123,335 + H281DRAFT_04939 0.25 -0.9 124,299 + H281DRAFT_04940 0.18 -0.2 124,299 + H281DRAFT_04940 0.18 -0.5 124,299 + H281DRAFT_04940 0.18 +0.6 124,300 - H281DRAFT_04940 0.18 +0.6 124,300 - H281DRAFT_04940 0.18 -0.5 124,666 + H281DRAFT_04940 0.50 +0.5 124,666 + H281DRAFT_04940 0.50 -0.3 124,852 + H281DRAFT_04940 0.66 +0.5
Or see this region's nucleotide sequence