Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04765 and H281DRAFT_04766 are separated by 517 nucleotides H281DRAFT_04766 and H281DRAFT_04767 are separated by 46 nucleotides
H281DRAFT_04765: H281DRAFT_04765 - MFS transporter, putative metabolite:H+ symporter, at 180,739 to 182,220
_04765
H281DRAFT_04766: H281DRAFT_04766 - Glycosyltransferase involved in cell wall bisynthesis, at 182,738 to 183,721
_04766
H281DRAFT_04767: H281DRAFT_04767 - GlcNAc-PI de-N-acetylase, at 183,768 to 186,164
_04767
Position (kb) 182
183
184 Strain fitness (log2 ratio) -1
0
1 at 181.772 kb on - strand, within H281DRAFT_04765 at 181.772 kb on - strand, within H281DRAFT_04765 at 181.772 kb on - strand, within H281DRAFT_04765 at 181.772 kb on - strand, within H281DRAFT_04765 at 181.973 kb on - strand, within H281DRAFT_04765 at 181.975 kb on - strand, within H281DRAFT_04765 at 182.247 kb on + strand at 182.308 kb on + strand at 182.325 kb on - strand at 182.339 kb on + strand at 182.339 kb on + strand at 182.548 kb on + strand at 182.548 kb on + strand at 183.025 kb on - strand, within H281DRAFT_04766 at 183.077 kb on + strand, within H281DRAFT_04766 at 183.078 kb on - strand, within H281DRAFT_04766 at 183.078 kb on - strand, within H281DRAFT_04766 at 183.079 kb on + strand, within H281DRAFT_04766 at 183.080 kb on - strand, within H281DRAFT_04766 at 183.216 kb on - strand, within H281DRAFT_04766 at 183.219 kb on + strand, within H281DRAFT_04766 at 183.219 kb on + strand, within H281DRAFT_04766 at 183.219 kb on + strand, within H281DRAFT_04766 at 183.219 kb on + strand, within H281DRAFT_04766 at 183.220 kb on - strand, within H281DRAFT_04766 at 183.220 kb on - strand, within H281DRAFT_04766 at 183.465 kb on + strand, within H281DRAFT_04766 at 183.584 kb on + strand, within H281DRAFT_04766 at 183.646 kb on + strand at 183.672 kb on - strand at 183.816 kb on + strand at 183.817 kb on - strand at 183.817 kb on - strand at 183.970 kb on + strand at 184.014 kb on + strand, within H281DRAFT_04767 at 184.014 kb on + strand, within H281DRAFT_04767 at 184.015 kb on - strand, within H281DRAFT_04767 at 184.480 kb on + strand, within H281DRAFT_04767 at 184.599 kb on - strand, within H281DRAFT_04767
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 181,772 - H281DRAFT_04765 0.70 +0.0 181,772 - H281DRAFT_04765 0.70 +1.4 181,772 - H281DRAFT_04765 0.70 +0.5 181,772 - H281DRAFT_04765 0.70 -0.1 181,973 - H281DRAFT_04765 0.83 -0.1 181,975 - H281DRAFT_04765 0.83 +0.2 182,247 + -0.2 182,308 + -0.2 182,325 - -1.2 182,339 + +0.2 182,339 + -0.0 182,548 + -0.3 182,548 + +0.3 183,025 - H281DRAFT_04766 0.29 -0.4 183,077 + H281DRAFT_04766 0.34 +0.3 183,078 - H281DRAFT_04766 0.35 -0.4 183,078 - H281DRAFT_04766 0.35 +0.3 183,079 + H281DRAFT_04766 0.35 +0.1 183,080 - H281DRAFT_04766 0.35 +0.7 183,216 - H281DRAFT_04766 0.49 +0.9 183,219 + H281DRAFT_04766 0.49 +0.2 183,219 + H281DRAFT_04766 0.49 -0.2 183,219 + H281DRAFT_04766 0.49 +0.6 183,219 + H281DRAFT_04766 0.49 +0.4 183,220 - H281DRAFT_04766 0.49 -0.2 183,220 - H281DRAFT_04766 0.49 -0.1 183,465 + H281DRAFT_04766 0.74 -0.2 183,584 + H281DRAFT_04766 0.86 +1.0 183,646 + +0.3 183,672 - -0.2 183,816 + +0.1 183,817 - +0.3 183,817 - +1.1 183,970 + +0.4 184,014 + H281DRAFT_04767 0.10 +0.9 184,014 + H281DRAFT_04767 0.10 +1.0 184,015 - H281DRAFT_04767 0.10 +0.7 184,480 + H281DRAFT_04767 0.30 +0.2 184,599 - H281DRAFT_04767 0.35 +0.1
Or see this region's nucleotide sequence