Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04463 and H281DRAFT_04464 overlap by 8 nucleotides H281DRAFT_04464 and H281DRAFT_04465 overlap by 4 nucleotides
H281DRAFT_04463: H281DRAFT_04463 - transcriptional regulator, RpiR family, at 187,492 to 188,373
_04463
H281DRAFT_04464: H281DRAFT_04464 - myo-inositol 2-dehydrogenase, at 188,366 to 189,385
_04464
H281DRAFT_04465: H281DRAFT_04465 - myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase, at 189,382 to 190,428
_04465
Position (kb) 188
189
190 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 187.471 kb on + strand at 187.555 kb on - strand at 187.559 kb on - strand at 187.559 kb on - strand at 187.597 kb on + strand, within H281DRAFT_04463 at 187.597 kb on + strand, within H281DRAFT_04463 at 187.600 kb on - strand, within H281DRAFT_04463 at 187.747 kb on + strand, within H281DRAFT_04463 at 187.747 kb on + strand, within H281DRAFT_04463 at 187.747 kb on + strand, within H281DRAFT_04463 at 187.748 kb on - strand, within H281DRAFT_04463 at 187.749 kb on + strand, within H281DRAFT_04463 at 187.952 kb on - strand, within H281DRAFT_04463 at 187.952 kb on - strand, within H281DRAFT_04463 at 188.000 kb on - strand, within H281DRAFT_04463 at 188.056 kb on + strand, within H281DRAFT_04463 at 188.138 kb on - strand, within H281DRAFT_04463 at 188.234 kb on - strand, within H281DRAFT_04463 at 188.337 kb on - strand at 188.472 kb on - strand, within H281DRAFT_04464 at 188.472 kb on - strand, within H281DRAFT_04464 at 188.488 kb on + strand, within H281DRAFT_04464 at 189.145 kb on + strand, within H281DRAFT_04464 at 189.162 kb on - strand, within H281DRAFT_04464 at 189.469 kb on + strand at 189.797 kb on - strand, within H281DRAFT_04465 at 189.797 kb on - strand, within H281DRAFT_04465 at 189.879 kb on + strand, within H281DRAFT_04465
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 187,471 + -0.8 187,555 - -3.8 187,559 - -2.4 187,559 - -0.2 187,597 + H281DRAFT_04463 0.12 -2.4 187,597 + H281DRAFT_04463 0.12 -1.4 187,600 - H281DRAFT_04463 0.12 -2.3 187,747 + H281DRAFT_04463 0.29 -0.1 187,747 + H281DRAFT_04463 0.29 +0.1 187,747 + H281DRAFT_04463 0.29 +0.3 187,748 - H281DRAFT_04463 0.29 -1.7 187,749 + H281DRAFT_04463 0.29 -1.1 187,952 - H281DRAFT_04463 0.52 -2.9 187,952 - H281DRAFT_04463 0.52 -2.6 188,000 - H281DRAFT_04463 0.58 -1.9 188,056 + H281DRAFT_04463 0.64 -0.5 188,138 - H281DRAFT_04463 0.73 -2.2 188,234 - H281DRAFT_04463 0.84 -0.8 188,337 - -0.6 188,472 - H281DRAFT_04464 0.10 -0.7 188,472 - H281DRAFT_04464 0.10 -0.4 188,488 + H281DRAFT_04464 0.12 -0.3 189,145 + H281DRAFT_04464 0.76 -1.1 189,162 - H281DRAFT_04464 0.78 -0.5 189,469 + +0.7 189,797 - H281DRAFT_04465 0.40 -0.2 189,797 - H281DRAFT_04465 0.40 -0.7 189,879 + H281DRAFT_04465 0.47 +0.1
Or see this region's nucleotide sequence