Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04459 and H281DRAFT_04460 are separated by 63 nucleotides H281DRAFT_04460 and H281DRAFT_04461 are separated by 13 nucleotides H281DRAFT_04461 and H281DRAFT_04462 are separated by 140 nucleotides
H281DRAFT_04459: H281DRAFT_04459 - 5-dehydro-2-deoxygluconokinase, at 181,890 to 183,938
_04459
H281DRAFT_04460: H281DRAFT_04460 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 184,002 to 184,841
_04460
H281DRAFT_04461: H281DRAFT_04461 - monosaccharide ABC transporter membrane protein, CUT2 family, at 184,855 to 186,027
_04461
H281DRAFT_04462: H281DRAFT_04462 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 186,168 to 187,214
_04462
Position (kb) 184
185
186
187 Strain fitness (log2 ratio) -2
-1
0
1 at 184.532 kb on - strand, within H281DRAFT_04460 at 184.883 kb on + strand at 184.928 kb on - strand at 185.580 kb on - strand, within H281DRAFT_04461 at 186.020 kb on - strand at 186.153 kb on - strand at 186.157 kb on - strand at 186.187 kb on + strand at 186.274 kb on + strand, within H281DRAFT_04462 at 186.275 kb on - strand, within H281DRAFT_04462 at 186.386 kb on - strand, within H281DRAFT_04462 at 186.386 kb on - strand, within H281DRAFT_04462 at 186.587 kb on - strand, within H281DRAFT_04462 at 186.650 kb on - strand, within H281DRAFT_04462 at 186.784 kb on + strand, within H281DRAFT_04462 at 186.890 kb on + strand, within H281DRAFT_04462 at 186.891 kb on - strand, within H281DRAFT_04462
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 184,532 - H281DRAFT_04460 0.63 -2.6 184,883 + +1.1 184,928 - -1.9 185,580 - H281DRAFT_04461 0.62 +0.8 186,020 - -1.3 186,153 - -1.1 186,157 - -1.0 186,187 + -0.9 186,274 + H281DRAFT_04462 0.10 +0.1 186,275 - H281DRAFT_04462 0.10 -0.6 186,386 - H281DRAFT_04462 0.21 +0.1 186,386 - H281DRAFT_04462 0.21 -0.9 186,587 - H281DRAFT_04462 0.40 -0.5 186,650 - H281DRAFT_04462 0.46 -0.7 186,784 + H281DRAFT_04462 0.59 -0.8 186,890 + H281DRAFT_04462 0.69 -0.9 186,891 - H281DRAFT_04462 0.69 -0.7
Or see this region's nucleotide sequence