Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04360 and H281DRAFT_04361 are separated by 18 nucleotides H281DRAFT_04361 and H281DRAFT_04362 are separated by 186 nucleotides
H281DRAFT_04360: H281DRAFT_04360 - GTP-binding protein LepA, at 76,362 to 78,155
_04360
H281DRAFT_04361: H281DRAFT_04361 - signal peptidase I Serine peptidase. MEROPS family S26A, at 78,174 to 79,067
_04361
H281DRAFT_04362: H281DRAFT_04362 - RNAse III (EC 3.1.26.3), at 79,254 to 80,624
_04362
Position (kb) 78
79
80 Strain fitness (log2 ratio) -1
0
1
2 at 77.586 kb on + strand, within H281DRAFT_04360 at 77.586 kb on + strand, within H281DRAFT_04360 at 77.586 kb on + strand, within H281DRAFT_04360 at 77.601 kb on + strand, within H281DRAFT_04360 at 77.661 kb on + strand at 77.661 kb on + strand, within H281DRAFT_04360 at 77.966 kb on + strand, within H281DRAFT_04360 at 77.999 kb on + strand at 79.162 kb on + strand at 79.166 kb on + strand at 79.166 kb on + strand at 79.166 kb on + strand at 79.166 kb on + strand at 79.166 kb on + strand at 79.166 kb on + strand at 79.167 kb on - strand at 79.176 kb on + strand at 79.242 kb on + strand at 79.242 kb on + strand at 79.242 kb on + strand at 79.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 77,586 + H281DRAFT_04360 0.68 -0.1 77,586 + H281DRAFT_04360 0.68 +0.4 77,586 + H281DRAFT_04360 0.68 +0.1 77,601 + H281DRAFT_04360 0.69 -1.0 77,661 + +0.1 77,661 + H281DRAFT_04360 0.72 +0.4 77,966 + H281DRAFT_04360 0.89 -1.6 77,999 + -0.8 79,162 + -0.1 79,166 + +0.7 79,166 + +0.4 79,166 + +0.6 79,166 + +0.6 79,166 + +0.9 79,166 + -0.3 79,167 - -0.4 79,176 + +0.0 79,242 + +1.8 79,242 + +1.1 79,242 + +1.2 79,243 - +1.9
Or see this region's nucleotide sequence