Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04345 and H281DRAFT_04346 are separated by 386 nucleotides H281DRAFT_04346 and H281DRAFT_04347 are separated by 101 nucleotides H281DRAFT_04347 and H281DRAFT_04348 are separated by 172 nucleotides
H281DRAFT_04345: H281DRAFT_04345 - septum formation protein, at 63,517 to 64,134
_04345
H281DRAFT_04346: H281DRAFT_04346 - uncharacterized protein, at 64,521 to 65,165
_04346
H281DRAFT_04347: H281DRAFT_04347 - LSU ribosomal protein L32P, at 65,267 to 65,446
_04347
H281DRAFT_04348: H281DRAFT_04348 - phosphate:acyl-[acyl carrier protein] acyltransferase, at 65,619 to 66,725
_04348
Position (kb) 64
65
66 Strain fitness (log2 ratio) -1
0
1
2
3 at 63.532 kb on + strand at 63.671 kb on + strand, within H281DRAFT_04345 at 63.671 kb on + strand, within H281DRAFT_04345 at 63.693 kb on - strand, within H281DRAFT_04345 at 63.693 kb on - strand, within H281DRAFT_04345 at 63.693 kb on - strand, within H281DRAFT_04345 at 63.693 kb on - strand, within H281DRAFT_04345 at 63.693 kb on - strand, within H281DRAFT_04345 at 63.796 kb on - strand, within H281DRAFT_04345 at 63.796 kb on - strand, within H281DRAFT_04345 at 64.066 kb on + strand, within H281DRAFT_04345 at 64.067 kb on - strand, within H281DRAFT_04345 at 64.067 kb on - strand, within H281DRAFT_04345 at 64.067 kb on - strand, within H281DRAFT_04345 at 64.150 kb on - strand at 64.164 kb on + strand at 64.165 kb on - strand at 64.165 kb on - strand at 64.199 kb on + strand at 64.199 kb on + strand at 64.306 kb on + strand at 64.416 kb on + strand at 64.416 kb on + strand at 64.473 kb on + strand at 64.645 kb on + strand, within H281DRAFT_04346 at 64.645 kb on + strand, within H281DRAFT_04346 at 64.755 kb on + strand, within H281DRAFT_04346
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 63,532 + -0.2 63,671 + H281DRAFT_04345 0.25 -0.5 63,671 + H281DRAFT_04345 0.25 -0.0 63,693 - H281DRAFT_04345 0.28 +0.2 63,693 - H281DRAFT_04345 0.28 +0.6 63,693 - H281DRAFT_04345 0.28 -0.1 63,693 - H281DRAFT_04345 0.28 +0.1 63,693 - H281DRAFT_04345 0.28 +0.6 63,796 - H281DRAFT_04345 0.45 -0.6 63,796 - H281DRAFT_04345 0.45 +2.9 64,066 + H281DRAFT_04345 0.89 +0.3 64,067 - H281DRAFT_04345 0.89 +0.4 64,067 - H281DRAFT_04345 0.89 +0.3 64,067 - H281DRAFT_04345 0.89 +0.5 64,150 - -0.3 64,164 + +0.4 64,165 - -0.1 64,165 - +0.1 64,199 + -0.2 64,199 + +0.3 64,306 + -0.5 64,416 + +0.1 64,416 + -0.3 64,473 + -0.2 64,645 + H281DRAFT_04346 0.19 -0.3 64,645 + H281DRAFT_04346 0.19 -1.2 64,755 + H281DRAFT_04346 0.36 -0.5
Or see this region's nucleotide sequence