Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04318 and H281DRAFT_04319 are separated by 311 nucleotides H281DRAFT_04319 and H281DRAFT_04320 are separated by 81 nucleotides H281DRAFT_04320 and H281DRAFT_04321 are separated by 218 nucleotides
H281DRAFT_04318: H281DRAFT_04318 - ribosome-associated protein, at 37,019 to 37,237
_04318
H281DRAFT_04319: H281DRAFT_04319 - hypothetical protein, at 37,549 to 38,013
_04319
H281DRAFT_04320: H281DRAFT_04320 - hypothetical protein, at 38,095 to 38,376
_04320
H281DRAFT_04321: H281DRAFT_04321 - DNA helicase-2 / ATP-dependent DNA helicase PcrA, at 38,595 to 40,724
_04321
Position (kb) 38
39 Strain fitness (log2 ratio) -1
0
1
2
3 at 37.203 kb on + strand, within H281DRAFT_04318 at 37.272 kb on + strand at 37.273 kb on - strand at 37.273 kb on - strand at 37.451 kb on + strand at 37.452 kb on - strand at 37.533 kb on + strand at 37.533 kb on + strand at 37.533 kb on + strand at 37.534 kb on - strand at 37.534 kb on - strand at 37.563 kb on + strand at 37.563 kb on + strand at 37.563 kb on + strand at 37.564 kb on - strand at 37.564 kb on - strand at 37.564 kb on - strand at 37.656 kb on + strand, within H281DRAFT_04319 at 37.657 kb on - strand, within H281DRAFT_04319 at 37.664 kb on + strand, within H281DRAFT_04319 at 37.664 kb on + strand, within H281DRAFT_04319 at 37.664 kb on + strand, within H281DRAFT_04319 at 37.665 kb on - strand, within H281DRAFT_04319 at 37.665 kb on - strand, within H281DRAFT_04319 at 37.665 kb on - strand, within H281DRAFT_04319 at 37.665 kb on - strand, within H281DRAFT_04319 at 37.782 kb on - strand, within H281DRAFT_04319 at 37.782 kb on - strand, within H281DRAFT_04319 at 37.885 kb on + strand, within H281DRAFT_04319 at 37.886 kb on - strand, within H281DRAFT_04319 at 37.886 kb on - strand, within H281DRAFT_04319 at 37.886 kb on - strand, within H281DRAFT_04319 at 37.886 kb on - strand, within H281DRAFT_04319 at 38.004 kb on + strand at 38.004 kb on + strand at 38.081 kb on + strand at 38.112 kb on + strand at 38.374 kb on + strand at 38.375 kb on - strand at 38.375 kb on - strand at 38.375 kb on - strand at 38.432 kb on + strand at 38.466 kb on + strand at 38.467 kb on - strand at 38.510 kb on + strand at 38.547 kb on + strand at 38.547 kb on + strand at 38.548 kb on - strand at 38.586 kb on + strand at 38.586 kb on + strand at 38.774 kb on - strand at 38.866 kb on + strand, within H281DRAFT_04321 at 38.867 kb on - strand, within H281DRAFT_04321 at 38.867 kb on - strand, within H281DRAFT_04321 at 38.870 kb on + strand, within H281DRAFT_04321 at 38.870 kb on + strand, within H281DRAFT_04321 at 38.870 kb on + strand, within H281DRAFT_04321 at 38.870 kb on + strand, within H281DRAFT_04321 at 38.870 kb on + strand, within H281DRAFT_04321 at 38.870 kb on + strand, within H281DRAFT_04321 at 38.870 kb on + strand, within H281DRAFT_04321 at 38.871 kb on - strand, within H281DRAFT_04321 at 38.871 kb on - strand, within H281DRAFT_04321 at 38.871 kb on - strand, within H281DRAFT_04321 at 38.939 kb on + strand, within H281DRAFT_04321 at 38.967 kb on + strand, within H281DRAFT_04321 at 38.968 kb on - strand, within H281DRAFT_04321 at 39.216 kb on + strand, within H281DRAFT_04321 at 39.270 kb on + strand, within H281DRAFT_04321 at 39.271 kb on - strand, within H281DRAFT_04321 at 39.348 kb on + strand, within H281DRAFT_04321 at 39.349 kb on - strand, within H281DRAFT_04321 at 39.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 37,203 + H281DRAFT_04318 0.84 -0.2 37,272 + -0.2 37,273 - +0.6 37,273 - -0.0 37,451 + -0.4 37,452 - -1.3 37,533 + +0.0 37,533 + +0.4 37,533 + -0.6 37,534 - +0.2 37,534 - +1.7 37,563 + +0.4 37,563 + -0.4 37,563 + -0.6 37,564 - +0.1 37,564 - -1.1 37,564 - +0.5 37,656 + H281DRAFT_04319 0.23 +0.5 37,657 - H281DRAFT_04319 0.23 -0.1 37,664 + H281DRAFT_04319 0.25 -0.2 37,664 + H281DRAFT_04319 0.25 +0.2 37,664 + H281DRAFT_04319 0.25 -0.9 37,665 - H281DRAFT_04319 0.25 +0.2 37,665 - H281DRAFT_04319 0.25 -0.6 37,665 - H281DRAFT_04319 0.25 +0.5 37,665 - H281DRAFT_04319 0.25 -0.6 37,782 - H281DRAFT_04319 0.50 -0.8 37,782 - H281DRAFT_04319 0.50 +0.2 37,885 + H281DRAFT_04319 0.72 -0.1 37,886 - H281DRAFT_04319 0.72 +0.5 37,886 - H281DRAFT_04319 0.72 +0.6 37,886 - H281DRAFT_04319 0.72 +0.2 37,886 - H281DRAFT_04319 0.72 -0.3 38,004 + +0.1 38,004 + -0.3 38,081 + -0.1 38,112 + -0.0 38,374 + -0.1 38,375 - -0.0 38,375 - +0.2 38,375 - +0.7 38,432 + -0.1 38,466 + -0.7 38,467 - -0.5 38,510 + -0.5 38,547 + -0.2 38,547 + -0.1 38,548 - +1.2 38,586 + +0.2 38,586 + +0.9 38,774 - +0.3 38,866 + H281DRAFT_04321 0.13 -0.1 38,867 - H281DRAFT_04321 0.13 -0.2 38,867 - H281DRAFT_04321 0.13 +0.1 38,870 + H281DRAFT_04321 0.13 -0.2 38,870 + H281DRAFT_04321 0.13 +0.2 38,870 + H281DRAFT_04321 0.13 -0.3 38,870 + H281DRAFT_04321 0.13 +0.4 38,870 + H281DRAFT_04321 0.13 -0.2 38,870 + H281DRAFT_04321 0.13 +0.0 38,870 + H281DRAFT_04321 0.13 -0.5 38,871 - H281DRAFT_04321 0.13 +0.6 38,871 - H281DRAFT_04321 0.13 +1.2 38,871 - H281DRAFT_04321 0.13 +0.4 38,939 + H281DRAFT_04321 0.16 -0.0 38,967 + H281DRAFT_04321 0.17 +0.2 38,968 - H281DRAFT_04321 0.18 -0.2 39,216 + H281DRAFT_04321 0.29 +0.6 39,270 + H281DRAFT_04321 0.32 +0.1 39,271 - H281DRAFT_04321 0.32 -0.2 39,348 + H281DRAFT_04321 0.35 +1.0 39,349 - H281DRAFT_04321 0.35 -0.3 39,349 - +3.1
Or see this region's nucleotide sequence