Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04259 and H281DRAFT_04260 are separated by 126 nucleotides H281DRAFT_04260 and H281DRAFT_04261 are separated by 265 nucleotides H281DRAFT_04261 and H281DRAFT_04262 are separated by 11 nucleotides
H281DRAFT_04259: H281DRAFT_04259 - anhydro-N-acetylmuramic acid kinase, at 377,839 to 378,969
_04259
H281DRAFT_04260: H281DRAFT_04260 - iron-sulfur cluster insertion protein, at 379,096 to 379,461
_04260
H281DRAFT_04261: H281DRAFT_04261 - SSU ribosomal protein S9P, at 379,727 to 380,119
_04261
H281DRAFT_04262: H281DRAFT_04262 - LSU ribosomal protein L13P, at 380,131 to 380,559
_04262
Position (kb) 379
380
381 Strain fitness (log2 ratio) -1
0
1 at 378.798 kb on - strand, within H281DRAFT_04259 at 378.798 kb on - strand, within H281DRAFT_04259 at 379.484 kb on - strand at 379.491 kb on - strand at 379.495 kb on + strand at 379.495 kb on + strand at 379.495 kb on + strand at 379.496 kb on - strand at 379.544 kb on + strand at 379.544 kb on + strand at 379.544 kb on + strand at 379.544 kb on + strand at 379.545 kb on - strand at 379.545 kb on - strand at 379.649 kb on + strand at 379.649 kb on + strand at 379.650 kb on - strand at 380.869 kb on + strand at 380.869 kb on + strand at 380.869 kb on + strand at 380.869 kb on + strand at 380.870 kb on - strand at 380.871 kb on + strand at 380.871 kb on + strand at 380.872 kb on - strand at 380.966 kb on - strand at 380.966 kb on - strand at 380.969 kb on + strand at 380.969 kb on + strand at 380.969 kb on + strand at 380.970 kb on - strand at 380.970 kb on - strand at 380.970 kb on - strand at 380.970 kb on - strand at 380.985 kb on - strand at 381.015 kb on + strand at 381.020 kb on + strand at 381.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 378,798 - H281DRAFT_04259 0.85 -0.6 378,798 - H281DRAFT_04259 0.85 +1.0 379,484 - -1.0 379,491 - -0.2 379,495 + +0.0 379,495 + -0.4 379,495 + +1.6 379,496 - +1.2 379,544 + +0.2 379,544 + -0.1 379,544 + +0.0 379,544 + -0.0 379,545 - -0.1 379,545 - +0.3 379,649 + -0.7 379,649 + +0.1 379,650 - -0.9 380,869 + -0.3 380,869 + +0.2 380,869 + -0.1 380,869 + +0.6 380,870 - +0.3 380,871 + -0.0 380,871 + +0.7 380,872 - +0.1 380,966 - +1.2 380,966 - -0.4 380,969 + +0.4 380,969 + +0.2 380,969 + -0.3 380,970 - -0.0 380,970 - -0.1 380,970 - -1.0 380,970 - +0.0 380,985 - +0.1 381,015 + +0.3 381,020 + -0.2 381,099 + -0.4
Or see this region's nucleotide sequence