Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04225

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04224 and H281DRAFT_04225 are separated by 595 nucleotidesH281DRAFT_04225 and H281DRAFT_04226 are separated by 318 nucleotidesH281DRAFT_04226 and H281DRAFT_04227 are separated by 204 nucleotides H281DRAFT_04224: H281DRAFT_04224 - Fatty acid desaturase, at 343,609 to 344,436 _04224 H281DRAFT_04225: H281DRAFT_04225 - transcriptional regulator, DeoR family, at 345,032 to 345,811 _04225 H281DRAFT_04226: H281DRAFT_04226 - hypothetical protein, at 346,130 to 346,327 _04226 H281DRAFT_04227: H281DRAFT_04227 - hypothetical protein, at 346,532 to 346,906 _04227 Position (kb) 345 346Strain fitness (log2 ratio) -2 -1 0 1 2 3at 344.120 kb on + strand, within H281DRAFT_04224at 344.121 kb on - strand, within H281DRAFT_04224at 344.136 kb on + strand, within H281DRAFT_04224at 344.160 kb on - strand, within H281DRAFT_04224at 344.175 kb on - strand, within H281DRAFT_04224at 344.183 kb on + strand, within H281DRAFT_04224at 344.183 kb on + strand, within H281DRAFT_04224at 344.184 kb on - strand, within H281DRAFT_04224at 344.284 kb on - strand, within H281DRAFT_04224at 344.291 kb on + strand, within H281DRAFT_04224at 344.291 kb on + strand, within H281DRAFT_04224at 344.292 kb on - strand, within H281DRAFT_04224at 344.338 kb on + strand, within H281DRAFT_04224at 344.339 kb on - strand, within H281DRAFT_04224at 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.390 kb on - strandat 344.390 kb on - strandat 344.491 kb on + strandat 344.491 kb on + strandat 344.492 kb on - strandat 344.543 kb on + strandat 344.550 kb on - strandat 344.570 kb on + strandat 344.570 kb on + strandat 344.613 kb on + strandat 344.643 kb on + strandat 344.781 kb on - strandat 344.781 kb on - strandat 344.781 kb on - strandat 344.911 kb on + strandat 344.911 kb on + strandat 344.911 kb on + strandat 344.912 kb on - strandat 344.912 kb on - strandat 344.954 kb on + strandat 344.954 kb on + strandat 344.954 kb on + strandat 344.955 kb on - strandat 344.959 kb on + strandat 344.960 kb on - strandat 344.960 kb on - strandat 344.960 kb on - strandat 344.975 kb on + strandat 344.976 kb on - strandat 344.976 kb on - strandat 345.248 kb on + strand, within H281DRAFT_04225at 345.248 kb on + strand, within H281DRAFT_04225at 345.249 kb on - strand, within H281DRAFT_04225at 345.301 kb on - strand, within H281DRAFT_04225at 345.406 kb on + strand, within H281DRAFT_04225at 345.406 kb on + strand, within H281DRAFT_04225at 345.797 kb on + strandat 345.797 kb on + strandat 345.798 kb on - strandat 345.798 kb on - strandat 345.957 kb on + strandat 345.957 kb on + strandat 345.957 kb on + strandat 346.006 kb on + strandat 346.011 kb on - strandat 346.278 kb on + strand, within H281DRAFT_04226at 346.396 kb on + strandat 346.396 kb on + strandat 346.397 kb on - strandat 346.397 kb on - strandat 346.397 kb on - strandat 346.497 kb on + strandat 346.497 kb on + strandat 346.498 kb on - strandat 346.574 kb on + strand, within H281DRAFT_04227at 346.574 kb on + strand, within H281DRAFT_04227at 346.574 kb on + strand, within H281DRAFT_04227at 346.575 kb on - strand, within H281DRAFT_04227at 346.575 kb on - strand, within H281DRAFT_04227at 346.575 kb on - strand, within H281DRAFT_04227at 346.636 kb on + strand, within H281DRAFT_04227at 346.637 kb on - strand, within H281DRAFT_04227at 346.656 kb on + strand, within H281DRAFT_04227at 346.657 kb on - strand, within H281DRAFT_04227at 346.657 kb on - strand, within H281DRAFT_04227at 346.689 kb on + strand, within H281DRAFT_04227at 346.689 kb on + strand, within H281DRAFT_04227at 346.690 kb on - strand, within H281DRAFT_04227at 346.728 kb on + strand, within H281DRAFT_04227at 346.728 kb on + strand, within H281DRAFT_04227at 346.728 kb on + strand, within H281DRAFT_04227at 346.729 kb on - strand, within H281DRAFT_04227at 346.729 kb on - strand, within H281DRAFT_04227at 346.729 kb on - strand, within H281DRAFT_04227at 346.729 kb on - strand, within H281DRAFT_04227at 346.729 kb on - strand, within H281DRAFT_04227at 346.749 kb on + strand, within H281DRAFT_04227at 346.750 kb on - strand, within H281DRAFT_04227at 346.750 kb on - strand, within H281DRAFT_04227at 346.773 kb on + strand, within H281DRAFT_04227

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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344,120 + H281DRAFT_04224 0.62 -1.0
344,121 - H281DRAFT_04224 0.62 -1.0
344,136 + H281DRAFT_04224 0.64 -0.1
344,160 - H281DRAFT_04224 0.67 +0.6
344,175 - H281DRAFT_04224 0.68 -0.1
344,183 + H281DRAFT_04224 0.69 -0.6
344,183 + H281DRAFT_04224 0.69 -0.1
344,184 - H281DRAFT_04224 0.69 +0.4
344,284 - H281DRAFT_04224 0.82 -0.1
344,291 + H281DRAFT_04224 0.82 +0.3
344,291 + H281DRAFT_04224 0.82 +0.4
344,292 - H281DRAFT_04224 0.82 -0.2
344,338 + H281DRAFT_04224 0.88 +0.3
344,339 - H281DRAFT_04224 0.88 -0.4
344,389 + -0.2
344,389 + -0.3
344,389 + -0.3
344,389 + +0.4
344,389 + +0.5
344,389 + +0.5
344,389 + -0.1
344,389 + -0.5
344,390 - -0.1
344,390 - -0.0
344,491 + -0.4
344,491 + +0.3
344,492 - -0.3
344,543 + -0.5
344,550 - -0.2
344,570 + -0.7
344,570 + -0.0
344,613 + -1.0
344,643 + -1.0
344,781 - -0.6
344,781 - -1.0
344,781 - +1.3
344,911 + +0.0
344,911 + +1.0
344,911 + -0.9
344,912 - +0.0
344,912 - -0.0
344,954 + -0.3
344,954 + -0.6
344,954 + +0.2
344,955 - +1.6
344,959 + -0.8
344,960 - +0.6
344,960 - +0.2
344,960 - +1.4
344,975 + -0.3
344,976 - +1.3
344,976 - +1.3
345,248 + H281DRAFT_04225 0.28 +1.5
345,248 + H281DRAFT_04225 0.28 +2.0
345,249 - H281DRAFT_04225 0.28 +1.3
345,301 - H281DRAFT_04225 0.34 +2.7
345,406 + H281DRAFT_04225 0.48 +1.0
345,406 + H281DRAFT_04225 0.48 +0.8
345,797 + +3.4
345,797 + +0.2
345,798 - +0.9
345,798 - +0.9
345,957 + -0.3
345,957 + +0.5
345,957 + +0.6
346,006 + -0.4
346,011 - +0.0
346,278 + H281DRAFT_04226 0.75 +0.3
346,396 + +0.1
346,396 + +1.0
346,397 - +0.5
346,397 - -0.2
346,397 - -0.4
346,497 + -0.1
346,497 + -0.1
346,498 - +0.2
346,574 + H281DRAFT_04227 0.11 +0.5
346,574 + H281DRAFT_04227 0.11 +0.4
346,574 + H281DRAFT_04227 0.11 -0.9
346,575 - H281DRAFT_04227 0.11 -0.6
346,575 - H281DRAFT_04227 0.11 -0.2
346,575 - H281DRAFT_04227 0.11 +0.4
346,636 + H281DRAFT_04227 0.28 -0.4
346,637 - H281DRAFT_04227 0.28 +0.0
346,656 + H281DRAFT_04227 0.33 +0.0
346,657 - H281DRAFT_04227 0.33 -0.0
346,657 - H281DRAFT_04227 0.33 -0.8
346,689 + H281DRAFT_04227 0.42 -0.2
346,689 + H281DRAFT_04227 0.42 -0.3
346,690 - H281DRAFT_04227 0.42 +0.0
346,728 + H281DRAFT_04227 0.52 -2.0
346,728 + H281DRAFT_04227 0.52 +0.3
346,728 + H281DRAFT_04227 0.52 -1.6
346,729 - H281DRAFT_04227 0.53 +0.1
346,729 - H281DRAFT_04227 0.53 +0.4
346,729 - H281DRAFT_04227 0.53 -0.0
346,729 - H281DRAFT_04227 0.53 +1.0
346,729 - H281DRAFT_04227 0.53 +0.0
346,749 + H281DRAFT_04227 0.58 -0.7
346,750 - H281DRAFT_04227 0.58 -0.5
346,750 - H281DRAFT_04227 0.58 +0.9
346,773 + H281DRAFT_04227 0.64 +0.7

Or see this region's nucleotide sequence