Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04222

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04220 and H281DRAFT_04221 are separated by 126 nucleotidesH281DRAFT_04221 and H281DRAFT_04222 are separated by 217 nucleotidesH281DRAFT_04222 and H281DRAFT_04223 are separated by 224 nucleotidesH281DRAFT_04223 and H281DRAFT_04224 are separated by 109 nucleotides H281DRAFT_04220: H281DRAFT_04220 - Cytochrome c, mono- and diheme variants, at 338,958 to 340,256 _04220 H281DRAFT_04221: H281DRAFT_04221 - hemolysin III, at 340,383 to 341,003 _04221 H281DRAFT_04222: H281DRAFT_04222 - ATP-dependent RNA helicase RhlE, at 341,221 to 342,753 _04222 H281DRAFT_04223: H281DRAFT_04223 - hypothetical protein, at 342,978 to 343,499 _04223 H281DRAFT_04224: H281DRAFT_04224 - Fatty acid desaturase, at 343,609 to 344,436 _04224 Position (kb) 341 342 343Strain fitness (log2 ratio) -2 -1 0 1 2at 340.254 kb on + strandat 340.255 kb on - strandat 340.413 kb on - strandat 340.491 kb on + strand, within H281DRAFT_04221at 340.491 kb on + strand, within H281DRAFT_04221at 340.491 kb on + strand, within H281DRAFT_04221at 340.491 kb on + strand, within H281DRAFT_04221at 340.491 kb on + strand, within H281DRAFT_04221at 340.492 kb on - strand, within H281DRAFT_04221at 340.492 kb on - strand, within H281DRAFT_04221at 340.492 kb on - strand, within H281DRAFT_04221at 340.515 kb on + strand, within H281DRAFT_04221at 340.515 kb on + strand, within H281DRAFT_04221at 340.515 kb on + strand, within H281DRAFT_04221at 340.539 kb on + strand, within H281DRAFT_04221at 340.539 kb on + strand, within H281DRAFT_04221at 340.539 kb on + strand, within H281DRAFT_04221at 340.540 kb on - strand, within H281DRAFT_04221at 340.540 kb on - strand, within H281DRAFT_04221at 340.544 kb on + strand, within H281DRAFT_04221at 340.544 kb on + strand, within H281DRAFT_04221at 340.558 kb on - strand, within H281DRAFT_04221at 340.558 kb on - strand, within H281DRAFT_04221at 340.558 kb on - strand, within H281DRAFT_04221at 340.581 kb on - strand, within H281DRAFT_04221at 340.621 kb on - strand, within H281DRAFT_04221at 340.641 kb on + strand, within H281DRAFT_04221at 340.641 kb on + strand, within H281DRAFT_04221at 340.641 kb on + strand, within H281DRAFT_04221at 340.642 kb on - strand, within H281DRAFT_04221at 340.779 kb on + strand, within H281DRAFT_04221at 340.779 kb on + strand, within H281DRAFT_04221at 340.780 kb on - strand, within H281DRAFT_04221at 340.780 kb on - strand, within H281DRAFT_04221at 340.780 kb on - strand, within H281DRAFT_04221at 340.780 kb on - strand, within H281DRAFT_04221at 340.780 kb on - strand, within H281DRAFT_04221at 340.878 kb on + strand, within H281DRAFT_04221at 340.878 kb on + strand, within H281DRAFT_04221at 340.879 kb on - strand, within H281DRAFT_04221at 340.879 kb on - strand, within H281DRAFT_04221at 340.879 kb on - strand, within H281DRAFT_04221at 340.879 kb on - strand, within H281DRAFT_04221at 340.893 kb on + strand, within H281DRAFT_04221at 340.894 kb on - strand, within H281DRAFT_04221at 340.933 kb on + strand, within H281DRAFT_04221at 340.934 kb on + strand, within H281DRAFT_04221at 340.935 kb on - strand, within H281DRAFT_04221at 340.935 kb on - strand, within H281DRAFT_04221at 340.935 kb on - strand, within H281DRAFT_04221at 340.951 kb on + strandat 341.029 kb on - strandat 341.220 kb on + strandat 341.267 kb on + strandat 341.268 kb on - strandat 341.268 kb on - strandat 341.527 kb on + strand, within H281DRAFT_04222at 341.527 kb on + strand, within H281DRAFT_04222at 341.528 kb on - strand, within H281DRAFT_04222at 341.528 kb on - strand, within H281DRAFT_04222at 341.643 kb on + strand, within H281DRAFT_04222at 341.643 kb on + strand, within H281DRAFT_04222at 341.644 kb on - strand, within H281DRAFT_04222at 341.644 kb on - strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.706 kb on + strand, within H281DRAFT_04222at 341.707 kb on - strand, within H281DRAFT_04222at 341.969 kb on + strand, within H281DRAFT_04222at 341.969 kb on + strand, within H281DRAFT_04222at 341.970 kb on - strand, within H281DRAFT_04222at 341.970 kb on - strand, within H281DRAFT_04222at 341.970 kb on - strand, within H281DRAFT_04222at 342.211 kb on + strand, within H281DRAFT_04222at 342.341 kb on + strand, within H281DRAFT_04222at 342.342 kb on - strand, within H281DRAFT_04222at 342.815 kb on - strandat 342.864 kb on + strandat 342.864 kb on + strandat 342.864 kb on + strandat 342.865 kb on - strandat 342.865 kb on - strandat 342.899 kb on + strandat 342.900 kb on - strandat 342.901 kb on + strandat 342.902 kb on - strandat 343.070 kb on + strand, within H281DRAFT_04223at 343.070 kb on + strand, within H281DRAFT_04223at 343.071 kb on - strand, within H281DRAFT_04223at 343.071 kb on - strand, within H281DRAFT_04223at 343.071 kb on - strand, within H281DRAFT_04223at 343.136 kb on + strand, within H281DRAFT_04223at 343.137 kb on - strand, within H281DRAFT_04223at 343.137 kb on - strand, within H281DRAFT_04223at 343.138 kb on + strand, within H281DRAFT_04223at 343.138 kb on + strand, within H281DRAFT_04223at 343.138 kb on + strand, within H281DRAFT_04223at 343.139 kb on - strand, within H281DRAFT_04223at 343.139 kb on - strand, within H281DRAFT_04223at 343.202 kb on - strand, within H281DRAFT_04223at 343.315 kb on + strand, within H281DRAFT_04223at 343.315 kb on + strand, within H281DRAFT_04223at 343.315 kb on + strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.576 kb on - strandat 343.576 kb on - strandat 343.649 kb on + strandat 343.650 kb on - strandat 343.728 kb on + strand, within H281DRAFT_04224

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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340,254 + +0.4
340,255 - -1.1
340,413 - +0.4
340,491 + H281DRAFT_04221 0.17 -0.7
340,491 + H281DRAFT_04221 0.17 -0.6
340,491 + H281DRAFT_04221 0.17 -0.1
340,491 + H281DRAFT_04221 0.17 -0.5
340,491 + H281DRAFT_04221 0.17 -0.0
340,492 - H281DRAFT_04221 0.18 -0.7
340,492 - H281DRAFT_04221 0.18 +0.4
340,492 - H281DRAFT_04221 0.18 -0.0
340,515 + H281DRAFT_04221 0.21 -0.6
340,515 + H281DRAFT_04221 0.21 +0.2
340,515 + H281DRAFT_04221 0.21 +0.0
340,539 + H281DRAFT_04221 0.25 +0.4
340,539 + H281DRAFT_04221 0.25 -0.2
340,539 + H281DRAFT_04221 0.25 -0.3
340,540 - H281DRAFT_04221 0.25 -0.2
340,540 - H281DRAFT_04221 0.25 -0.4
340,544 + H281DRAFT_04221 0.26 +0.2
340,544 + H281DRAFT_04221 0.26 -0.6
340,558 - H281DRAFT_04221 0.28 +1.0
340,558 - H281DRAFT_04221 0.28 -0.4
340,558 - H281DRAFT_04221 0.28 +0.1
340,581 - H281DRAFT_04221 0.32 -0.1
340,621 - H281DRAFT_04221 0.38 +0.5
340,641 + H281DRAFT_04221 0.42 -0.8
340,641 + H281DRAFT_04221 0.42 -0.2
340,641 + H281DRAFT_04221 0.42 -0.0
340,642 - H281DRAFT_04221 0.42 +0.3
340,779 + H281DRAFT_04221 0.64 +0.1
340,779 + H281DRAFT_04221 0.64 +0.8
340,780 - H281DRAFT_04221 0.64 -0.2
340,780 - H281DRAFT_04221 0.64 -0.2
340,780 - H281DRAFT_04221 0.64 +0.6
340,780 - H281DRAFT_04221 0.64 -0.3
340,780 - H281DRAFT_04221 0.64 -0.2
340,878 + H281DRAFT_04221 0.80 -0.6
340,878 + H281DRAFT_04221 0.80 -0.3
340,879 - H281DRAFT_04221 0.80 -0.7
340,879 - H281DRAFT_04221 0.80 +1.8
340,879 - H281DRAFT_04221 0.80 +0.1
340,879 - H281DRAFT_04221 0.80 -0.3
340,893 + H281DRAFT_04221 0.82 -0.5
340,894 - H281DRAFT_04221 0.82 -0.3
340,933 + H281DRAFT_04221 0.89 -0.2
340,934 + H281DRAFT_04221 0.89 -0.8
340,935 - H281DRAFT_04221 0.89 +0.1
340,935 - H281DRAFT_04221 0.89 +1.0
340,935 - H281DRAFT_04221 0.89 +0.6
340,951 + +0.1
341,029 - +0.0
341,220 + +0.3
341,267 + +1.3
341,268 - -0.2
341,268 - -0.2
341,527 + H281DRAFT_04222 0.20 -0.4
341,527 + H281DRAFT_04222 0.20 -0.9
341,528 - H281DRAFT_04222 0.20 -0.5
341,528 - H281DRAFT_04222 0.20 -0.1
341,643 + H281DRAFT_04222 0.28 -0.3
341,643 + H281DRAFT_04222 0.28 +0.6
341,644 - H281DRAFT_04222 0.28 +0.6
341,644 - H281DRAFT_04222 0.28 +1.5
341,706 + H281DRAFT_04222 0.32 +0.8
341,706 + H281DRAFT_04222 0.32 -0.4
341,706 + H281DRAFT_04222 0.32 +0.0
341,706 + H281DRAFT_04222 0.32 +0.6
341,706 + H281DRAFT_04222 0.32 +0.0
341,706 + H281DRAFT_04222 0.32 -0.1
341,707 - H281DRAFT_04222 0.32 +0.3
341,969 + H281DRAFT_04222 0.49 +0.1
341,969 + H281DRAFT_04222 0.49 +0.2
341,970 - H281DRAFT_04222 0.49 +0.0
341,970 - H281DRAFT_04222 0.49 +0.7
341,970 - H281DRAFT_04222 0.49 +0.2
342,211 + H281DRAFT_04222 0.65 -0.1
342,341 + H281DRAFT_04222 0.73 -0.4
342,342 - H281DRAFT_04222 0.73 +0.7
342,815 - +0.7
342,864 + +0.2
342,864 + -0.2
342,864 + +0.5
342,865 - +0.1
342,865 - +0.5
342,899 + -0.3
342,900 - +1.2
342,901 + -0.5
342,902 - +0.8
343,070 + H281DRAFT_04223 0.18 -0.2
343,070 + H281DRAFT_04223 0.18 -0.6
343,071 - H281DRAFT_04223 0.18 +0.3
343,071 - H281DRAFT_04223 0.18 +0.1
343,071 - H281DRAFT_04223 0.18 -0.5
343,136 + H281DRAFT_04223 0.30 -0.1
343,137 - H281DRAFT_04223 0.30 +0.4
343,137 - H281DRAFT_04223 0.30 +0.0
343,138 + H281DRAFT_04223 0.31 -0.0
343,138 + H281DRAFT_04223 0.31 +0.1
343,138 + H281DRAFT_04223 0.31 -0.4
343,139 - H281DRAFT_04223 0.31 -0.0
343,139 - H281DRAFT_04223 0.31 +0.4
343,202 - H281DRAFT_04223 0.43 -2.6
343,315 + H281DRAFT_04223 0.65 -0.6
343,315 + H281DRAFT_04223 0.65 -0.6
343,315 + H281DRAFT_04223 0.65 -0.2
343,316 - H281DRAFT_04223 0.65 +0.6
343,316 - H281DRAFT_04223 0.65 +0.3
343,316 - H281DRAFT_04223 0.65 +0.2
343,316 - H281DRAFT_04223 0.65 +0.8
343,576 - +0.4
343,576 - +0.6
343,649 + +0.2
343,650 - +0.5
343,728 + H281DRAFT_04224 0.14 +0.5

Or see this region's nucleotide sequence