Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04101 and H281DRAFT_04102 are separated by 371 nucleotides H281DRAFT_04102 and H281DRAFT_04103 are separated by 494 nucleotides
H281DRAFT_04101: H281DRAFT_04101 - transcriptional regulator, GntR family, at 209,176 to 210,588
_04101
H281DRAFT_04102: H281DRAFT_04102 - drug resistance transporter, EmrB/QacA subfamily, at 210,960 to 212,345
_04102
H281DRAFT_04103: H281DRAFT_04103 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 212,840 to 214,117
_04103
Position (kb) 210
211
212
213 Strain fitness (log2 ratio) -1
0
1
2 at 210.043 kb on + strand, within H281DRAFT_04101 at 210.110 kb on - strand, within H281DRAFT_04101 at 210.110 kb on - strand, within H281DRAFT_04101 at 210.112 kb on - strand, within H281DRAFT_04101 at 210.332 kb on + strand, within H281DRAFT_04101 at 210.478 kb on + strand at 210.478 kb on + strand at 210.479 kb on - strand at 210.753 kb on - strand at 210.846 kb on + strand at 211.090 kb on - strand at 211.218 kb on - strand, within H281DRAFT_04102 at 211.324 kb on - strand, within H281DRAFT_04102 at 211.403 kb on + strand, within H281DRAFT_04102 at 211.653 kb on + strand, within H281DRAFT_04102 at 211.744 kb on + strand, within H281DRAFT_04102 at 211.744 kb on + strand, within H281DRAFT_04102 at 211.792 kb on + strand, within H281DRAFT_04102 at 211.792 kb on + strand, within H281DRAFT_04102 at 211.812 kb on + strand at 211.898 kb on + strand, within H281DRAFT_04102 at 211.898 kb on + strand, within H281DRAFT_04102 at 211.902 kb on + strand, within H281DRAFT_04102 at 211.902 kb on + strand, within H281DRAFT_04102 at 211.902 kb on + strand, within H281DRAFT_04102 at 211.903 kb on - strand, within H281DRAFT_04102 at 211.903 kb on - strand, within H281DRAFT_04102 at 211.991 kb on - strand, within H281DRAFT_04102 at 212.507 kb on - strand at 212.529 kb on + strand at 212.530 kb on - strand at 212.750 kb on + strand at 212.750 kb on + strand at 212.751 kb on - strand at 212.751 kb on - strand at 212.925 kb on + strand at 212.925 kb on + strand at 213.040 kb on - strand, within H281DRAFT_04103 at 213.165 kb on + strand, within H281DRAFT_04103 at 213.201 kb on - strand, within H281DRAFT_04103 at 213.256 kb on - strand, within H281DRAFT_04103 at 213.342 kb on + strand, within H281DRAFT_04103
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 210,043 + H281DRAFT_04101 0.61 +1.0 210,110 - H281DRAFT_04101 0.66 +0.2 210,110 - H281DRAFT_04101 0.66 -0.8 210,112 - H281DRAFT_04101 0.66 -1.3 210,332 + H281DRAFT_04101 0.82 -0.9 210,478 + -0.3 210,478 + -0.3 210,479 - -0.4 210,753 - -0.7 210,846 + +1.6 211,090 - -1.0 211,218 - H281DRAFT_04102 0.19 -0.3 211,324 - H281DRAFT_04102 0.26 -1.0 211,403 + H281DRAFT_04102 0.32 +1.0 211,653 + H281DRAFT_04102 0.50 -1.0 211,744 + H281DRAFT_04102 0.57 +0.2 211,744 + H281DRAFT_04102 0.57 +0.3 211,792 + H281DRAFT_04102 0.60 +0.1 211,792 + H281DRAFT_04102 0.60 +0.3 211,812 + +2.0 211,898 + H281DRAFT_04102 0.68 +0.0 211,898 + H281DRAFT_04102 0.68 -0.2 211,902 + H281DRAFT_04102 0.68 -0.4 211,902 + H281DRAFT_04102 0.68 -0.0 211,902 + H281DRAFT_04102 0.68 +0.2 211,903 - H281DRAFT_04102 0.68 +0.3 211,903 - H281DRAFT_04102 0.68 -0.2 211,991 - H281DRAFT_04102 0.74 -0.4 212,507 - +0.6 212,529 + -0.3 212,530 - +0.6 212,750 + +0.2 212,750 + +0.2 212,751 - +0.7 212,751 - +0.0 212,925 + -0.4 212,925 + -0.2 213,040 - H281DRAFT_04103 0.16 -0.4 213,165 + H281DRAFT_04103 0.25 +0.7 213,201 - H281DRAFT_04103 0.28 +0.0 213,256 - H281DRAFT_04103 0.33 -0.1 213,342 + H281DRAFT_04103 0.39 -0.7
Or see this region's nucleotide sequence