Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03944 and H281DRAFT_03945 are separated by 182 nucleotides H281DRAFT_03945 and H281DRAFT_03946 overlap by 4 nucleotides H281DRAFT_03946 and H281DRAFT_03947 are separated by 87 nucleotides
H281DRAFT_03944: H281DRAFT_03944 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 45,183 to 46,907
_03944
H281DRAFT_03945: H281DRAFT_03945 - cobalt-zinc-cadmium efflux system protein, at 47,090 to 48,382
_03945
H281DRAFT_03946: H281DRAFT_03946 - transcriptional regulator, ArsR family, at 48,379 to 48,747
_03946
H281DRAFT_03947: H281DRAFT_03947 - Tetratricopeptide repeat-containing protein, at 48,835 to 50,718
_03947
Position (kb) 47
48
49 Strain fitness (log2 ratio) -2
-1
0
1 at 46.429 kb on + strand, within H281DRAFT_03944 at 46.429 kb on + strand, within H281DRAFT_03944 at 46.430 kb on - strand, within H281DRAFT_03944 at 46.603 kb on + strand, within H281DRAFT_03944 at 46.604 kb on - strand, within H281DRAFT_03944 at 46.814 kb on + strand at 46.815 kb on - strand at 46.936 kb on + strand at 46.937 kb on - strand at 46.942 kb on - strand at 46.991 kb on + strand at 47.016 kb on - strand at 47.418 kb on + strand, within H281DRAFT_03945 at 47.476 kb on + strand, within H281DRAFT_03945 at 47.478 kb on + strand, within H281DRAFT_03945 at 47.537 kb on - strand, within H281DRAFT_03945 at 47.537 kb on - strand at 47.775 kb on + strand, within H281DRAFT_03945 at 47.898 kb on + strand, within H281DRAFT_03945 at 47.899 kb on - strand, within H281DRAFT_03945 at 47.899 kb on - strand, within H281DRAFT_03945 at 47.899 kb on - strand, within H281DRAFT_03945 at 47.899 kb on - strand, within H281DRAFT_03945 at 47.901 kb on - strand, within H281DRAFT_03945 at 47.901 kb on - strand, within H281DRAFT_03945 at 47.901 kb on - strand, within H281DRAFT_03945 at 47.901 kb on - strand, within H281DRAFT_03945 at 48.249 kb on - strand, within H281DRAFT_03945 at 48.322 kb on + strand at 48.473 kb on + strand, within H281DRAFT_03946 at 48.474 kb on - strand, within H281DRAFT_03946 at 48.474 kb on - strand, within H281DRAFT_03946 at 48.858 kb on + strand at 48.881 kb on + strand at 49.158 kb on + strand, within H281DRAFT_03947 at 49.159 kb on - strand, within H281DRAFT_03947 at 49.189 kb on + strand, within H281DRAFT_03947 at 49.189 kb on + strand, within H281DRAFT_03947 at 49.189 kb on + strand, within H281DRAFT_03947 at 49.189 kb on + strand, within H281DRAFT_03947 at 49.190 kb on - strand, within H281DRAFT_03947 at 49.190 kb on - strand, within H281DRAFT_03947 at 49.190 kb on - strand, within H281DRAFT_03947
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 46,429 + H281DRAFT_03944 0.72 -0.1 46,429 + H281DRAFT_03944 0.72 -0.7 46,430 - H281DRAFT_03944 0.72 +0.3 46,603 + H281DRAFT_03944 0.82 +0.6 46,604 - H281DRAFT_03944 0.82 +0.2 46,814 + +0.0 46,815 - +0.2 46,936 + -0.2 46,937 - -0.4 46,942 - -0.1 46,991 + +0.6 47,016 - +0.5 47,418 + H281DRAFT_03945 0.25 +0.5 47,476 + H281DRAFT_03945 0.30 -0.7 47,478 + H281DRAFT_03945 0.30 -0.2 47,537 - H281DRAFT_03945 0.35 -0.4 47,537 - -0.6 47,775 + H281DRAFT_03945 0.53 -0.3 47,898 + H281DRAFT_03945 0.62 +0.3 47,899 - H281DRAFT_03945 0.63 +0.3 47,899 - H281DRAFT_03945 0.63 +0.2 47,899 - H281DRAFT_03945 0.63 +0.1 47,899 - H281DRAFT_03945 0.63 +0.4 47,901 - H281DRAFT_03945 0.63 +0.4 47,901 - H281DRAFT_03945 0.63 -0.1 47,901 - H281DRAFT_03945 0.63 +0.3 47,901 - H281DRAFT_03945 0.63 -0.2 48,249 - H281DRAFT_03945 0.90 -0.1 48,322 + +0.2 48,473 + H281DRAFT_03946 0.25 +0.3 48,474 - H281DRAFT_03946 0.26 -0.5 48,474 - H281DRAFT_03946 0.26 -0.2 48,858 + -1.1 48,881 + -1.5 49,158 + H281DRAFT_03947 0.17 -1.6 49,159 - H281DRAFT_03947 0.17 -1.3 49,189 + H281DRAFT_03947 0.19 -1.8 49,189 + H281DRAFT_03947 0.19 -1.5 49,189 + H281DRAFT_03947 0.19 -0.7 49,189 + H281DRAFT_03947 0.19 -0.5 49,190 - H281DRAFT_03947 0.19 -1.2 49,190 - H281DRAFT_03947 0.19 -1.1 49,190 - H281DRAFT_03947 0.19 -1.5
Or see this region's nucleotide sequence