Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03811 and H281DRAFT_03812 are separated by 1 nucleotides H281DRAFT_03812 and H281DRAFT_03813 are separated by 36 nucleotides H281DRAFT_03813 and H281DRAFT_03814 are separated by 414 nucleotides
H281DRAFT_03811: H281DRAFT_03811 - Protein of unknown function (DUF1446), at 333,730 to 335,088
_03811
H281DRAFT_03812: H281DRAFT_03812 - hypothetical protein, at 335,090 to 335,407
_03812
H281DRAFT_03813: H281DRAFT_03813 - transcriptional regulator, GntR family, at 335,444 to 336,154
_03813
H281DRAFT_03814: H281DRAFT_03814 - Sugar phosphate permease, at 336,569 to 337,900
_03814
Position (kb) 335
336
337 Strain fitness (log2 ratio) -1
0
1 at 334.564 kb on + strand, within H281DRAFT_03811 at 334.691 kb on - strand, within H281DRAFT_03811 at 334.726 kb on + strand, within H281DRAFT_03811 at 334.727 kb on - strand, within H281DRAFT_03811 at 334.967 kb on - strand at 334.967 kb on - strand at 335.098 kb on - strand at 335.098 kb on - strand at 335.137 kb on + strand, within H281DRAFT_03812 at 335.137 kb on + strand, within H281DRAFT_03812 at 335.138 kb on - strand, within H281DRAFT_03812 at 335.162 kb on + strand, within H281DRAFT_03812 at 335.169 kb on + strand, within H281DRAFT_03812 at 335.177 kb on + strand, within H281DRAFT_03812 at 335.560 kb on - strand, within H281DRAFT_03813 at 336.267 kb on + strand at 336.406 kb on + strand at 336.407 kb on - strand at 336.407 kb on - strand at 336.743 kb on + strand, within H281DRAFT_03814 at 337.069 kb on + strand, within H281DRAFT_03814 at 337.140 kb on - strand, within H281DRAFT_03814 at 337.142 kb on - strand, within H281DRAFT_03814
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 334,564 + H281DRAFT_03811 0.61 +0.3 334,691 - H281DRAFT_03811 0.71 -0.7 334,726 + H281DRAFT_03811 0.73 -0.6 334,727 - H281DRAFT_03811 0.73 -1.2 334,967 - -1.2 334,967 - -0.0 335,098 - -1.0 335,098 - -0.2 335,137 + H281DRAFT_03812 0.15 -0.6 335,137 + H281DRAFT_03812 0.15 -1.5 335,138 - H281DRAFT_03812 0.15 -0.7 335,162 + H281DRAFT_03812 0.23 -0.8 335,169 + H281DRAFT_03812 0.25 -1.5 335,177 + H281DRAFT_03812 0.27 -1.5 335,560 - H281DRAFT_03813 0.16 -0.1 336,267 + -0.2 336,406 + -0.8 336,407 - +0.7 336,407 - -0.4 336,743 + H281DRAFT_03814 0.13 -0.2 337,069 + H281DRAFT_03814 0.38 -0.2 337,140 - H281DRAFT_03814 0.43 -0.3 337,142 - H281DRAFT_03814 0.43 +0.6
Or see this region's nucleotide sequence