Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03764 and H281DRAFT_03765 overlap by 4 nucleotides H281DRAFT_03765 and H281DRAFT_03766 overlap by 4 nucleotides H281DRAFT_03766 and H281DRAFT_03767 are separated by 143 nucleotides
H281DRAFT_03764: H281DRAFT_03764 - ribulose-bisphosphate carboxylase large chain, at 281,776 to 283,074
_03764
H281DRAFT_03765: H281DRAFT_03765 - Uncharacterized conserved protein YgbK, DUF1537 family, at 283,071 to 284,462
_03765
H281DRAFT_03766: H281DRAFT_03766 - glucose 1-dehydrogenase, at 284,459 to 285,259
_03766
H281DRAFT_03767: H281DRAFT_03767 - Protein of unknown function (DUF3309), at 285,403 to 285,558
_03767
Position (kb) 283
284
285 Strain fitness (log2 ratio) -2
-1
0
1 at 282.729 kb on - strand, within H281DRAFT_03764 at 282.873 kb on + strand, within H281DRAFT_03764 at 283.135 kb on - strand at 283.163 kb on + strand at 283.365 kb on + strand, within H281DRAFT_03765 at 283.677 kb on + strand, within H281DRAFT_03765 at 283.678 kb on - strand, within H281DRAFT_03765 at 283.678 kb on - strand, within H281DRAFT_03765 at 283.747 kb on + strand, within H281DRAFT_03765 at 283.861 kb on - strand, within H281DRAFT_03765 at 284.001 kb on + strand, within H281DRAFT_03765 at 284.059 kb on + strand, within H281DRAFT_03765 at 284.060 kb on - strand, within H281DRAFT_03765 at 284.060 kb on - strand, within H281DRAFT_03765 at 284.111 kb on - strand, within H281DRAFT_03765 at 284.111 kb on - strand, within H281DRAFT_03765 at 284.450 kb on + strand at 284.599 kb on - strand, within H281DRAFT_03766 at 284.615 kb on + strand, within H281DRAFT_03766 at 284.770 kb on - strand, within H281DRAFT_03766 at 284.774 kb on - strand, within H281DRAFT_03766 at 285.298 kb on + strand at 285.298 kb on + strand at 285.299 kb on - strand at 285.305 kb on - strand at 285.373 kb on + strand at 285.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 282,729 - H281DRAFT_03764 0.73 +0.8 282,873 + H281DRAFT_03764 0.84 +0.5 283,135 - +0.1 283,163 + -0.3 283,365 + H281DRAFT_03765 0.21 +0.5 283,677 + H281DRAFT_03765 0.44 +0.3 283,678 - H281DRAFT_03765 0.44 -0.7 283,678 - H281DRAFT_03765 0.44 -0.5 283,747 + H281DRAFT_03765 0.49 -0.0 283,861 - H281DRAFT_03765 0.57 +0.1 284,001 + H281DRAFT_03765 0.67 -2.3 284,059 + H281DRAFT_03765 0.71 -1.3 284,060 - H281DRAFT_03765 0.71 +0.5 284,060 - H281DRAFT_03765 0.71 -0.5 284,111 - H281DRAFT_03765 0.75 -0.2 284,111 - H281DRAFT_03765 0.75 -0.4 284,450 + +0.1 284,599 - H281DRAFT_03766 0.17 -0.4 284,615 + H281DRAFT_03766 0.19 -0.2 284,770 - H281DRAFT_03766 0.39 -0.4 284,774 - H281DRAFT_03766 0.39 -0.4 285,298 + +0.1 285,298 + +0.0 285,299 - -0.0 285,305 - -0.4 285,373 + -0.4 285,374 - -0.1
Or see this region's nucleotide sequence