Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03470 and H281DRAFT_03471 overlap by 4 nucleotides H281DRAFT_03471 and H281DRAFT_03472 are separated by 349 nucleotides H281DRAFT_03472 and H281DRAFT_03473 are separated by 154 nucleotides
H281DRAFT_03470: H281DRAFT_03470 - kumamolisin. Serine peptidase. MEROPS family S53, at 552,941 to 554,560
_03470
H281DRAFT_03471: H281DRAFT_03471 - Carboxypeptidase C (cathepsin A), at 554,557 to 556,212
_03471
H281DRAFT_03472: H281DRAFT_03472 - hypothetical protein, at 556,562 to 557,014
_03472
H281DRAFT_03473: H281DRAFT_03473 - hypothetical protein, at 557,169 to 557,528
_03473
Position (kb) 554
555
556
557 Strain fitness (log2 ratio) -2
-1
0
1
2 at 553.586 kb on + strand, within H281DRAFT_03470 at 553.586 kb on + strand, within H281DRAFT_03470 at 553.691 kb on - strand, within H281DRAFT_03470 at 554.007 kb on - strand, within H281DRAFT_03470 at 554.007 kb on - strand, within H281DRAFT_03470 at 554.010 kb on + strand, within H281DRAFT_03470 at 554.011 kb on - strand, within H281DRAFT_03470 at 554.372 kb on + strand, within H281DRAFT_03470 at 554.373 kb on - strand, within H281DRAFT_03470 at 554.374 kb on + strand, within H281DRAFT_03470 at 554.375 kb on - strand, within H281DRAFT_03470 at 554.496 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.499 kb on - strand at 554.499 kb on - strand at 554.499 kb on - strand at 554.499 kb on - strand at 554.499 kb on - strand at 554.500 kb on + strand at 554.500 kb on + strand at 554.500 kb on + strand at 554.500 kb on + strand at 554.500 kb on + strand at 554.501 kb on - strand at 554.501 kb on - strand at 554.501 kb on - strand at 554.683 kb on + strand at 554.776 kb on + strand, within H281DRAFT_03471 at 554.777 kb on - strand, within H281DRAFT_03471 at 554.845 kb on + strand, within H281DRAFT_03471 at 554.846 kb on - strand, within H281DRAFT_03471 at 554.902 kb on + strand, within H281DRAFT_03471 at 554.903 kb on - strand, within H281DRAFT_03471 at 554.903 kb on - strand, within H281DRAFT_03471 at 555.011 kb on + strand, within H281DRAFT_03471 at 555.012 kb on - strand, within H281DRAFT_03471 at 555.220 kb on + strand, within H281DRAFT_03471 at 555.234 kb on + strand, within H281DRAFT_03471 at 555.289 kb on - strand, within H281DRAFT_03471 at 555.289 kb on - strand, within H281DRAFT_03471 at 555.593 kb on + strand, within H281DRAFT_03471 at 555.640 kb on + strand, within H281DRAFT_03471 at 555.739 kb on + strand, within H281DRAFT_03471 at 555.760 kb on + strand, within H281DRAFT_03471 at 555.760 kb on + strand, within H281DRAFT_03471 at 555.781 kb on + strand, within H281DRAFT_03471 at 555.782 kb on - strand, within H281DRAFT_03471 at 555.899 kb on + strand, within H281DRAFT_03471 at 555.899 kb on + strand, within H281DRAFT_03471 at 555.899 kb on + strand, within H281DRAFT_03471 at 555.901 kb on + strand, within H281DRAFT_03471 at 555.901 kb on + strand, within H281DRAFT_03471 at 555.994 kb on + strand, within H281DRAFT_03471 at 555.994 kb on + strand, within H281DRAFT_03471 at 555.995 kb on - strand, within H281DRAFT_03471 at 556.141 kb on + strand at 556.141 kb on + strand at 556.179 kb on + strand at 556.211 kb on - strand at 556.346 kb on + strand at 556.428 kb on + strand at 556.428 kb on + strand at 556.428 kb on + strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.429 kb on - strand at 556.432 kb on + strand at 556.433 kb on - strand at 556.606 kb on - strand at 556.620 kb on - strand, within H281DRAFT_03472 at 557.152 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 553,586 + H281DRAFT_03470 0.40 -0.2 553,586 + H281DRAFT_03470 0.40 -0.7 553,691 - H281DRAFT_03470 0.46 -0.1 554,007 - H281DRAFT_03470 0.66 +0.2 554,007 - H281DRAFT_03470 0.66 -0.4 554,010 + H281DRAFT_03470 0.66 -0.6 554,011 - H281DRAFT_03470 0.66 +0.7 554,372 + H281DRAFT_03470 0.88 -0.3 554,373 - H281DRAFT_03470 0.88 +0.1 554,374 + H281DRAFT_03470 0.88 -1.0 554,375 - H281DRAFT_03470 0.89 -0.1 554,496 + -0.5 554,498 + -1.1 554,498 + -0.1 554,498 + -1.0 554,498 + -0.4 554,498 + +0.4 554,498 + -0.3 554,498 + -0.9 554,499 - +0.3 554,499 - +0.2 554,499 - +0.6 554,499 - +1.3 554,499 - -0.1 554,500 + -0.2 554,500 + +1.6 554,500 + -0.3 554,500 + -0.5 554,500 + -0.3 554,501 - -0.8 554,501 - -1.3 554,501 - +0.2 554,683 + -0.1 554,776 + H281DRAFT_03471 0.13 +0.1 554,777 - H281DRAFT_03471 0.13 +1.2 554,845 + H281DRAFT_03471 0.17 -0.1 554,846 - H281DRAFT_03471 0.17 +0.1 554,902 + H281DRAFT_03471 0.21 +0.1 554,903 - H281DRAFT_03471 0.21 -0.1 554,903 - H281DRAFT_03471 0.21 +0.0 555,011 + H281DRAFT_03471 0.27 +0.3 555,012 - H281DRAFT_03471 0.27 +0.1 555,220 + H281DRAFT_03471 0.40 +0.3 555,234 + H281DRAFT_03471 0.41 -0.1 555,289 - H281DRAFT_03471 0.44 +1.1 555,289 - H281DRAFT_03471 0.44 -0.2 555,593 + H281DRAFT_03471 0.63 +0.1 555,640 + H281DRAFT_03471 0.65 -0.2 555,739 + H281DRAFT_03471 0.71 +0.3 555,760 + H281DRAFT_03471 0.73 -0.3 555,760 + H281DRAFT_03471 0.73 -0.4 555,781 + H281DRAFT_03471 0.74 -0.2 555,782 - H281DRAFT_03471 0.74 +0.4 555,899 + H281DRAFT_03471 0.81 -0.4 555,899 + H281DRAFT_03471 0.81 +0.6 555,899 + H281DRAFT_03471 0.81 +0.4 555,901 + H281DRAFT_03471 0.81 -0.4 555,901 + H281DRAFT_03471 0.81 +0.1 555,994 + H281DRAFT_03471 0.87 -0.3 555,994 + H281DRAFT_03471 0.87 -0.9 555,995 - H281DRAFT_03471 0.87 +0.1 556,141 + -1.9 556,141 + -0.4 556,179 + +0.1 556,211 - +0.3 556,346 + -0.3 556,428 + +0.7 556,428 + -0.3 556,428 + +1.2 556,429 - +0.5 556,429 - +0.7 556,429 - +0.3 556,429 - -0.3 556,429 - -0.7 556,429 - -0.0 556,429 - -0.5 556,432 + +2.0 556,433 - +0.0 556,606 - +0.3 556,620 - H281DRAFT_03472 0.13 +0.6 557,152 - -0.1
Or see this region's nucleotide sequence