Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03366

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03365 and H281DRAFT_03366 overlap by 4 nucleotidesH281DRAFT_03366 and H281DRAFT_03367 are separated by 22 nucleotides H281DRAFT_03365: H281DRAFT_03365 - choline dehydrogenase, at 425,817 to 427,457 _03365 H281DRAFT_03366: H281DRAFT_03366 - electron transfer flavoprotein beta subunit, at 427,454 to 428,203 _03366 H281DRAFT_03367: H281DRAFT_03367 - electron transfer flavoprotein alpha subunit apoprotein, at 428,226 to 429,170 _03367 Position (kb) 427 428 429Strain fitness (log2 ratio) -1 0 1at 426.482 kb on + strand, within H281DRAFT_03365at 426.482 kb on + strand, within H281DRAFT_03365at 426.708 kb on + strand, within H281DRAFT_03365at 426.829 kb on - strand, within H281DRAFT_03365at 427.138 kb on - strand, within H281DRAFT_03365at 427.198 kb on - strand, within H281DRAFT_03365at 427.438 kb on - strandat 428.251 kb on + strandat 428.294 kb on + strandat 428.617 kb on - strand, within H281DRAFT_03367at 428.997 kb on + strand, within H281DRAFT_03367at 429.168 kb on + strandat 429.169 kb on - strandat 429.173 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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426,482 + H281DRAFT_03365 0.41 +0.2
426,482 + H281DRAFT_03365 0.41 +0.4
426,708 + H281DRAFT_03365 0.54 -0.1
426,829 - H281DRAFT_03365 0.62 +0.2
427,138 - H281DRAFT_03365 0.80 +0.5
427,198 - H281DRAFT_03365 0.84 -0.4
427,438 - -0.1
428,251 + +0.1
428,294 + +0.2
428,617 - H281DRAFT_03367 0.41 +0.0
428,997 + H281DRAFT_03367 0.82 +0.0
429,168 + -0.4
429,169 - +0.5
429,173 - -0.1

Or see this region's nucleotide sequence