Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03347 and H281DRAFT_03348 overlap by 4 nucleotides H281DRAFT_03348 and H281DRAFT_03349 overlap by 4 nucleotides H281DRAFT_03349 and H281DRAFT_03350 are separated by 17 nucleotides H281DRAFT_03350 and H281DRAFT_03351 are separated by 86 nucleotides
H281DRAFT_03347: H281DRAFT_03347 - formiminoglutamase, at 406,657 to 407,625
_03347
H281DRAFT_03348: H281DRAFT_03348 - amino acid ABC transporter ATP-binding protein, PAAT family, at 407,622 to 408,398
_03348
H281DRAFT_03349: H281DRAFT_03349 - amino acid ABC transporter membrane protein, PAAT family, at 408,395 to 409,063
_03349
H281DRAFT_03350: H281DRAFT_03350 - amino acid ABC transporter substrate-binding protein, PAAT family, at 409,081 to 409,836
_03350
H281DRAFT_03351: H281DRAFT_03351 - transcriptional regulator, IclR family, at 409,923 to 410,687
_03351
Position (kb) 408
409
410 Strain fitness (log2 ratio) -1
0
1 at 408.065 kb on + strand, within H281DRAFT_03348 at 408.227 kb on + strand, within H281DRAFT_03348 at 408.475 kb on - strand, within H281DRAFT_03349 at 408.496 kb on - strand, within H281DRAFT_03349 at 409.125 kb on - strand at 409.209 kb on - strand, within H281DRAFT_03350 at 409.238 kb on - strand, within H281DRAFT_03350 at 409.238 kb on - strand, within H281DRAFT_03350 at 409.500 kb on - strand, within H281DRAFT_03350 at 409.544 kb on + strand, within H281DRAFT_03350 at 409.544 kb on + strand, within H281DRAFT_03350 at 409.544 kb on + strand, within H281DRAFT_03350 at 409.545 kb on - strand, within H281DRAFT_03350 at 409.938 kb on - strand at 409.965 kb on + strand at 409.966 kb on - strand at 409.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 408,065 + H281DRAFT_03348 0.57 -0.6 408,227 + H281DRAFT_03348 0.78 -0.2 408,475 - H281DRAFT_03349 0.12 +0.1 408,496 - H281DRAFT_03349 0.15 +0.8 409,125 - +0.1 409,209 - H281DRAFT_03350 0.17 -0.2 409,238 - H281DRAFT_03350 0.21 +0.1 409,238 - H281DRAFT_03350 0.21 -0.4 409,500 - H281DRAFT_03350 0.55 -0.4 409,544 + H281DRAFT_03350 0.61 -0.5 409,544 + H281DRAFT_03350 0.61 +0.3 409,544 + H281DRAFT_03350 0.61 -1.4 409,545 - H281DRAFT_03350 0.61 +0.0 409,938 - +0.0 409,965 + +0.4 409,966 - +1.0 409,966 - -0.3
Or see this region's nucleotide sequence