Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02432

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02431 and H281DRAFT_02432 are separated by 74 nucleotidesH281DRAFT_02432 and H281DRAFT_02433 are separated by 90 nucleotides H281DRAFT_02431: H281DRAFT_02431 - transketolase subunit B, at 602,772 to 603,752 _02431 H281DRAFT_02432: H281DRAFT_02432 - hypothetical protein, at 603,827 to 604,561 _02432 H281DRAFT_02433: H281DRAFT_02433 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 604,652 to 605,797 _02433 Position (kb) 603 604 605Strain fitness (log2 ratio) -1 0 1at 603.013 kb on - strand, within H281DRAFT_02431at 603.013 kb on - strand, within H281DRAFT_02431at 603.013 kb on - strand, within H281DRAFT_02431at 603.087 kb on + strand, within H281DRAFT_02431at 603.130 kb on + strand, within H281DRAFT_02431at 603.131 kb on - strand, within H281DRAFT_02431at 603.159 kb on + strand, within H281DRAFT_02431at 603.181 kb on + strand, within H281DRAFT_02431at 603.182 kb on - strand, within H281DRAFT_02431at 603.279 kb on + strand, within H281DRAFT_02431at 603.279 kb on + strand, within H281DRAFT_02431at 603.280 kb on - strand, within H281DRAFT_02431at 603.280 kb on - strand, within H281DRAFT_02431at 603.280 kb on - strand, within H281DRAFT_02431at 603.319 kb on - strand, within H281DRAFT_02431at 603.330 kb on + strand, within H281DRAFT_02431at 603.476 kb on + strand, within H281DRAFT_02431at 603.477 kb on - strand, within H281DRAFT_02431at 603.482 kb on - strand, within H281DRAFT_02431at 603.592 kb on - strandat 603.672 kb on + strandat 603.673 kb on - strandat 603.771 kb on + strandat 603.771 kb on + strandat 603.772 kb on - strandat 603.772 kb on - strandat 603.772 kb on - strandat 603.773 kb on + strandat 603.773 kb on + strandat 603.773 kb on + strandat 603.773 kb on + strandat 603.773 kb on + strandat 603.773 kb on + strandat 603.774 kb on - strandat 603.774 kb on - strandat 603.774 kb on - strandat 603.826 kb on + strandat 603.826 kb on + strandat 603.827 kb on - strandat 603.827 kb on - strandat 603.898 kb on - strandat 603.938 kb on - strand, within H281DRAFT_02432at 603.949 kb on + strand, within H281DRAFT_02432at 604.188 kb on - strand, within H281DRAFT_02432at 604.216 kb on - strand, within H281DRAFT_02432at 604.216 kb on - strand, within H281DRAFT_02432at 604.216 kb on - strand, within H281DRAFT_02432at 604.216 kb on - strand, within H281DRAFT_02432at 604.329 kb on - strand, within H281DRAFT_02432at 604.329 kb on - strand, within H281DRAFT_02432at 604.329 kb on - strand, within H281DRAFT_02432at 604.329 kb on - strand, within H281DRAFT_02432at 604.329 kb on - strand, within H281DRAFT_02432at 604.575 kb on + strandat 604.588 kb on + strandat 604.589 kb on - strandat 604.591 kb on - strandat 604.653 kb on + strandat 604.791 kb on + strandat 604.792 kb on - strand, within H281DRAFT_02433at 604.819 kb on - strand, within H281DRAFT_02433at 604.887 kb on + strand, within H281DRAFT_02433at 604.888 kb on - strand, within H281DRAFT_02433at 604.915 kb on - strand, within H281DRAFT_02433at 604.933 kb on + strand, within H281DRAFT_02433at 604.989 kb on + strand, within H281DRAFT_02433at 604.990 kb on - strand, within H281DRAFT_02433at 605.032 kb on + strand, within H281DRAFT_02433at 605.032 kb on + strand, within H281DRAFT_02433at 605.032 kb on + strand, within H281DRAFT_02433at 605.298 kb on + strand, within H281DRAFT_02433at 605.316 kb on + strand, within H281DRAFT_02433at 605.317 kb on - strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.365 kb on - strand, within H281DRAFT_02433at 605.365 kb on - strand, within H281DRAFT_02433at 605.365 kb on - strand, within H281DRAFT_02433

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
603,013 - H281DRAFT_02431 0.25 +0.1
603,013 - H281DRAFT_02431 0.25 +1.0
603,013 - H281DRAFT_02431 0.25 +0.3
603,087 + H281DRAFT_02431 0.32 +0.8
603,130 + H281DRAFT_02431 0.36 +0.9
603,131 - H281DRAFT_02431 0.37 +0.1
603,159 + H281DRAFT_02431 0.39 +0.7
603,181 + H281DRAFT_02431 0.42 -0.2
603,182 - H281DRAFT_02431 0.42 +0.6
603,279 + H281DRAFT_02431 0.52 +0.5
603,279 + H281DRAFT_02431 0.52 -0.5
603,280 - H281DRAFT_02431 0.52 +1.5
603,280 - H281DRAFT_02431 0.52 +0.1
603,280 - H281DRAFT_02431 0.52 +0.5
603,319 - H281DRAFT_02431 0.56 +0.1
603,330 + H281DRAFT_02431 0.57 +0.4
603,476 + H281DRAFT_02431 0.72 +0.6
603,477 - H281DRAFT_02431 0.72 +1.1
603,482 - H281DRAFT_02431 0.72 -0.3
603,592 - -0.4
603,672 + -0.2
603,673 - +0.3
603,771 + -1.3
603,771 + -0.6
603,772 - -0.0
603,772 - +0.5
603,772 - -0.5
603,773 + -0.2
603,773 + -0.5
603,773 + -0.5
603,773 + +1.0
603,773 + +0.5
603,773 + -0.4
603,774 - -0.1
603,774 - +1.0
603,774 - +0.0
603,826 + -0.1
603,826 + -0.1
603,827 - +0.2
603,827 - +0.0
603,898 - +0.5
603,938 - H281DRAFT_02432 0.15 +0.1
603,949 + H281DRAFT_02432 0.17 +0.4
604,188 - H281DRAFT_02432 0.49 -0.2
604,216 - H281DRAFT_02432 0.53 +0.6
604,216 - H281DRAFT_02432 0.53 +1.6
604,216 - H281DRAFT_02432 0.53 +0.6
604,216 - H281DRAFT_02432 0.53 -0.2
604,329 - H281DRAFT_02432 0.68 -0.2
604,329 - H281DRAFT_02432 0.68 -0.2
604,329 - H281DRAFT_02432 0.68 +0.4
604,329 - H281DRAFT_02432 0.68 +0.0
604,329 - H281DRAFT_02432 0.68 -0.3
604,575 + +0.1
604,588 + +0.4
604,589 - -0.3
604,591 - -0.1
604,653 + -0.3
604,791 + -0.6
604,792 - H281DRAFT_02433 0.12 -0.3
604,819 - H281DRAFT_02433 0.15 -1.0
604,887 + H281DRAFT_02433 0.21 -0.2
604,888 - H281DRAFT_02433 0.21 -1.1
604,915 - H281DRAFT_02433 0.23 -0.7
604,933 + H281DRAFT_02433 0.25 -0.0
604,989 + H281DRAFT_02433 0.29 +1.3
604,990 - H281DRAFT_02433 0.29 -0.0
605,032 + H281DRAFT_02433 0.33 -0.4
605,032 + H281DRAFT_02433 0.33 +0.0
605,032 + H281DRAFT_02433 0.33 -1.4
605,298 + H281DRAFT_02433 0.56 -0.8
605,316 + H281DRAFT_02433 0.58 -0.1
605,317 - H281DRAFT_02433 0.58 -0.3
605,364 + H281DRAFT_02433 0.62 +0.4
605,364 + H281DRAFT_02433 0.62 -1.4
605,364 + H281DRAFT_02433 0.62 -0.4
605,364 + H281DRAFT_02433 0.62 +0.1
605,365 - H281DRAFT_02433 0.62 -0.4
605,365 - H281DRAFT_02433 0.62 +0.3
605,365 - H281DRAFT_02433 0.62 -0.5

Or see this region's nucleotide sequence