Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02374

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02373 and H281DRAFT_02374 are separated by 101 nucleotidesH281DRAFT_02374 and H281DRAFT_02375 are separated by 278 nucleotides H281DRAFT_02373: H281DRAFT_02373 - methylmalonate-semialdehyde dehydrogenase [acylating], at 533,853 to 535,391 _02373 H281DRAFT_02374: H281DRAFT_02374 - choline dehydrogenase, at 535,493 to 537,205 _02374 H281DRAFT_02375: H281DRAFT_02375 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 537,484 to 538,263 _02375 Position (kb) 535 536 537 538Strain fitness (log2 ratio) -2 -1 0 1at 534.512 kb on + strand, within H281DRAFT_02373at 534.773 kb on + strand, within H281DRAFT_02373at 534.774 kb on - strand, within H281DRAFT_02373at 535.012 kb on + strand, within H281DRAFT_02373at 535.012 kb on + strand, within H281DRAFT_02373at 535.012 kb on + strand, within H281DRAFT_02373at 535.013 kb on - strand, within H281DRAFT_02373at 535.023 kb on - strand, within H281DRAFT_02373at 535.023 kb on - strand, within H281DRAFT_02373at 535.033 kb on - strand, within H281DRAFT_02373at 535.060 kb on + strand, within H281DRAFT_02373at 535.061 kb on - strand, within H281DRAFT_02373at 535.308 kb on + strandat 535.308 kb on + strandat 535.319 kb on + strandat 535.319 kb on + strandat 535.320 kb on - strandat 535.349 kb on + strandat 535.390 kb on - strandat 535.390 kb on - strandat 535.390 kb on - strandat 535.457 kb on + strandat 535.462 kb on - strandat 535.653 kb on - strandat 535.718 kb on + strand, within H281DRAFT_02374at 535.720 kb on + strand, within H281DRAFT_02374at 535.721 kb on - strand, within H281DRAFT_02374at 535.814 kb on + strand, within H281DRAFT_02374at 535.814 kb on + strand, within H281DRAFT_02374at 535.814 kb on + strand, within H281DRAFT_02374at 535.815 kb on - strand, within H281DRAFT_02374at 535.815 kb on - strand, within H281DRAFT_02374at 535.815 kb on - strand, within H281DRAFT_02374at 535.816 kb on + strand, within H281DRAFT_02374at 535.816 kb on + strand, within H281DRAFT_02374at 535.817 kb on - strand, within H281DRAFT_02374at 535.838 kb on + strand, within H281DRAFT_02374at 536.252 kb on + strand, within H281DRAFT_02374at 536.336 kb on - strand, within H281DRAFT_02374at 536.370 kb on + strand, within H281DRAFT_02374at 536.433 kb on - strand, within H281DRAFT_02374at 536.461 kb on + strand, within H281DRAFT_02374at 536.620 kb on - strand, within H281DRAFT_02374at 536.620 kb on - strand, within H281DRAFT_02374at 536.768 kb on + strand, within H281DRAFT_02374at 536.768 kb on + strand, within H281DRAFT_02374at 536.769 kb on - strand, within H281DRAFT_02374at 536.769 kb on - strand, within H281DRAFT_02374at 536.772 kb on + strand, within H281DRAFT_02374at 536.773 kb on - strand, within H281DRAFT_02374at 536.773 kb on - strand, within H281DRAFT_02374at 537.016 kb on + strand, within H281DRAFT_02374at 537.062 kb on - strandat 537.080 kb on - strandat 537.080 kb on - strandat 537.255 kb on + strandat 537.451 kb on + strandat 537.464 kb on + strandat 537.762 kb on - strand, within H281DRAFT_02375at 538.181 kb on - strand, within H281DRAFT_02375at 538.181 kb on - strand, within H281DRAFT_02375at 538.181 kb on - strand, within H281DRAFT_02375

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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534,512 + H281DRAFT_02373 0.43 -1.0
534,773 + H281DRAFT_02373 0.60 -2.3
534,774 - H281DRAFT_02373 0.60 -1.6
535,012 + H281DRAFT_02373 0.75 -1.2
535,012 + H281DRAFT_02373 0.75 -2.0
535,012 + H281DRAFT_02373 0.75 -1.2
535,013 - H281DRAFT_02373 0.75 -1.4
535,023 - H281DRAFT_02373 0.76 -2.4
535,023 - H281DRAFT_02373 0.76 -1.3
535,033 - H281DRAFT_02373 0.77 -1.2
535,060 + H281DRAFT_02373 0.78 -1.4
535,061 - H281DRAFT_02373 0.78 -0.7
535,308 + -2.1
535,308 + -1.0
535,319 + -2.6
535,319 + -1.1
535,320 - -1.4
535,349 + -1.0
535,390 - +0.6
535,390 - +0.9
535,390 - +0.9
535,457 + -0.7
535,462 - +0.1
535,653 - -0.7
535,718 + H281DRAFT_02374 0.13 +0.7
535,720 + H281DRAFT_02374 0.13 +1.4
535,721 - H281DRAFT_02374 0.13 +0.7
535,814 + H281DRAFT_02374 0.19 +0.9
535,814 + H281DRAFT_02374 0.19 +0.6
535,814 + H281DRAFT_02374 0.19 +1.0
535,815 - H281DRAFT_02374 0.19 +1.3
535,815 - H281DRAFT_02374 0.19 +1.2
535,815 - H281DRAFT_02374 0.19 +0.6
535,816 + H281DRAFT_02374 0.19 +0.3
535,816 + H281DRAFT_02374 0.19 -0.1
535,817 - H281DRAFT_02374 0.19 +0.6
535,838 + H281DRAFT_02374 0.20 +0.5
536,252 + H281DRAFT_02374 0.44 +0.6
536,336 - H281DRAFT_02374 0.49 +1.0
536,370 + H281DRAFT_02374 0.51 +0.5
536,433 - H281DRAFT_02374 0.55 +0.5
536,461 + H281DRAFT_02374 0.57 +1.0
536,620 - H281DRAFT_02374 0.66 +0.1
536,620 - H281DRAFT_02374 0.66 +0.4
536,768 + H281DRAFT_02374 0.74 +0.4
536,768 + H281DRAFT_02374 0.74 +1.1
536,769 - H281DRAFT_02374 0.74 +0.1
536,769 - H281DRAFT_02374 0.74 +0.7
536,772 + H281DRAFT_02374 0.75 -0.6
536,773 - H281DRAFT_02374 0.75 +0.8
536,773 - H281DRAFT_02374 0.75 +0.6
537,016 + H281DRAFT_02374 0.89 -0.3
537,062 - +0.5
537,080 - -0.0
537,080 - -1.4
537,255 + +1.5
537,451 + +0.0
537,464 + +0.0
537,762 - H281DRAFT_02375 0.36 +0.7
538,181 - H281DRAFT_02375 0.89 +0.3
538,181 - H281DRAFT_02375 0.89 +0.3
538,181 - H281DRAFT_02375 0.89 -0.2

Or see this region's nucleotide sequence