Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02372 and H281DRAFT_02373 are separated by 154 nucleotides H281DRAFT_02373 and H281DRAFT_02374 are separated by 101 nucleotides
H281DRAFT_02372: H281DRAFT_02372 - transcriptional regulator, LysR family, at 532,799 to 533,698
_02372
H281DRAFT_02373: H281DRAFT_02373 - methylmalonate-semialdehyde dehydrogenase [acylating], at 533,853 to 535,391
_02373
H281DRAFT_02374: H281DRAFT_02374 - choline dehydrogenase, at 535,493 to 537,205
_02374
Position (kb) 533
534
535
536 Strain fitness (log2 ratio) -2
-1
0
1 at 532.859 kb on - strand at 533.262 kb on + strand, within H281DRAFT_02372 at 533.263 kb on - strand, within H281DRAFT_02372 at 533.706 kb on + strand at 533.706 kb on + strand at 533.707 kb on - strand at 533.710 kb on - strand at 533.710 kb on - strand at 533.719 kb on + strand at 533.720 kb on - strand at 533.738 kb on - strand at 533.738 kb on - strand at 533.738 kb on - strand at 533.866 kb on - strand at 533.866 kb on - strand at 534.322 kb on + strand, within H281DRAFT_02373 at 534.323 kb on - strand, within H281DRAFT_02373 at 534.336 kb on - strand, within H281DRAFT_02373 at 534.388 kb on + strand, within H281DRAFT_02373 at 534.389 kb on - strand, within H281DRAFT_02373 at 534.460 kb on + strand, within H281DRAFT_02373 at 534.460 kb on + strand, within H281DRAFT_02373 at 534.512 kb on + strand, within H281DRAFT_02373 at 534.773 kb on + strand, within H281DRAFT_02373 at 534.774 kb on - strand, within H281DRAFT_02373 at 535.012 kb on + strand, within H281DRAFT_02373 at 535.012 kb on + strand, within H281DRAFT_02373 at 535.012 kb on + strand, within H281DRAFT_02373 at 535.013 kb on - strand, within H281DRAFT_02373 at 535.023 kb on - strand, within H281DRAFT_02373 at 535.023 kb on - strand, within H281DRAFT_02373 at 535.033 kb on - strand, within H281DRAFT_02373 at 535.060 kb on + strand, within H281DRAFT_02373 at 535.061 kb on - strand, within H281DRAFT_02373 at 535.308 kb on + strand at 535.308 kb on + strand at 535.319 kb on + strand at 535.319 kb on + strand at 535.320 kb on - strand at 535.349 kb on + strand at 535.390 kb on - strand at 535.390 kb on - strand at 535.390 kb on - strand at 535.457 kb on + strand at 535.462 kb on - strand at 535.653 kb on - strand at 535.718 kb on + strand, within H281DRAFT_02374 at 535.720 kb on + strand, within H281DRAFT_02374 at 535.721 kb on - strand, within H281DRAFT_02374 at 535.814 kb on + strand, within H281DRAFT_02374 at 535.814 kb on + strand, within H281DRAFT_02374 at 535.814 kb on + strand, within H281DRAFT_02374 at 535.815 kb on - strand, within H281DRAFT_02374 at 535.815 kb on - strand, within H281DRAFT_02374 at 535.815 kb on - strand, within H281DRAFT_02374 at 535.816 kb on + strand, within H281DRAFT_02374 at 535.816 kb on + strand, within H281DRAFT_02374 at 535.817 kb on - strand, within H281DRAFT_02374 at 535.838 kb on + strand, within H281DRAFT_02374 at 536.252 kb on + strand, within H281DRAFT_02374 at 536.336 kb on - strand, within H281DRAFT_02374 at 536.370 kb on + strand, within H281DRAFT_02374
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 532,859 - +0.5 533,262 + H281DRAFT_02372 0.51 -0.8 533,263 - H281DRAFT_02372 0.52 -1.0 533,706 + -0.9 533,706 + -1.2 533,707 - -0.0 533,710 - +0.4 533,710 - -1.5 533,719 + -1.3 533,720 - -1.3 533,738 - -1.3 533,738 - -1.3 533,738 - -1.4 533,866 - -0.5 533,866 - -1.4 534,322 + H281DRAFT_02373 0.30 -1.5 534,323 - H281DRAFT_02373 0.31 -0.4 534,336 - H281DRAFT_02373 0.31 -1.3 534,388 + H281DRAFT_02373 0.35 -0.2 534,389 - H281DRAFT_02373 0.35 -1.5 534,460 + H281DRAFT_02373 0.39 -0.9 534,460 + H281DRAFT_02373 0.39 -1.4 534,512 + H281DRAFT_02373 0.43 -1.0 534,773 + H281DRAFT_02373 0.60 -2.3 534,774 - H281DRAFT_02373 0.60 -1.6 535,012 + H281DRAFT_02373 0.75 -1.2 535,012 + H281DRAFT_02373 0.75 -2.0 535,012 + H281DRAFT_02373 0.75 -1.2 535,013 - H281DRAFT_02373 0.75 -1.4 535,023 - H281DRAFT_02373 0.76 -2.4 535,023 - H281DRAFT_02373 0.76 -1.3 535,033 - H281DRAFT_02373 0.77 -1.2 535,060 + H281DRAFT_02373 0.78 -1.4 535,061 - H281DRAFT_02373 0.78 -0.7 535,308 + -2.1 535,308 + -1.0 535,319 + -2.6 535,319 + -1.1 535,320 - -1.4 535,349 + -1.0 535,390 - +0.6 535,390 - +0.9 535,390 - +0.9 535,457 + -0.7 535,462 - +0.1 535,653 - -0.7 535,718 + H281DRAFT_02374 0.13 +0.7 535,720 + H281DRAFT_02374 0.13 +1.4 535,721 - H281DRAFT_02374 0.13 +0.7 535,814 + H281DRAFT_02374 0.19 +0.9 535,814 + H281DRAFT_02374 0.19 +0.6 535,814 + H281DRAFT_02374 0.19 +1.0 535,815 - H281DRAFT_02374 0.19 +1.3 535,815 - H281DRAFT_02374 0.19 +1.2 535,815 - H281DRAFT_02374 0.19 +0.6 535,816 + H281DRAFT_02374 0.19 +0.3 535,816 + H281DRAFT_02374 0.19 -0.1 535,817 - H281DRAFT_02374 0.19 +0.6 535,838 + H281DRAFT_02374 0.20 +0.5 536,252 + H281DRAFT_02374 0.44 +0.6 536,336 - H281DRAFT_02374 0.49 +1.0 536,370 + H281DRAFT_02374 0.51 +0.5
Or see this region's nucleotide sequence