Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02370 and H281DRAFT_02371 are separated by 27 nucleotides H281DRAFT_02371 and H281DRAFT_02372 are separated by 242 nucleotides H281DRAFT_02372 and H281DRAFT_02373 are separated by 154 nucleotides
H281DRAFT_02370: H281DRAFT_02370 - transcriptional regulator, AsnC family, at 531,501 to 531,992
_02370
H281DRAFT_02371: H281DRAFT_02371 - adenylate cyclase, at 532,020 to 532,556
_02371
H281DRAFT_02372: H281DRAFT_02372 - transcriptional regulator, LysR family, at 532,799 to 533,698
_02372
H281DRAFT_02373: H281DRAFT_02373 - methylmalonate-semialdehyde dehydrogenase [acylating], at 533,853 to 535,391
_02373
Position (kb) 532
533
534 Strain fitness (log2 ratio) -1
0
1 at 531.820 kb on - strand, within H281DRAFT_02370 at 531.830 kb on + strand, within H281DRAFT_02370 at 531.852 kb on + strand, within H281DRAFT_02370 at 531.852 kb on + strand, within H281DRAFT_02370 at 531.922 kb on + strand, within H281DRAFT_02370 at 531.923 kb on - strand, within H281DRAFT_02370 at 532.066 kb on + strand at 532.237 kb on + strand, within H281DRAFT_02371 at 532.238 kb on - strand, within H281DRAFT_02371 at 532.238 kb on - strand, within H281DRAFT_02371 at 532.238 kb on - strand, within H281DRAFT_02371 at 532.333 kb on + strand, within H281DRAFT_02371 at 532.333 kb on + strand, within H281DRAFT_02371 at 532.336 kb on + strand, within H281DRAFT_02371 at 532.336 kb on + strand, within H281DRAFT_02371 at 532.337 kb on - strand, within H281DRAFT_02371 at 532.372 kb on + strand, within H281DRAFT_02371 at 532.373 kb on - strand, within H281DRAFT_02371 at 532.467 kb on + strand, within H281DRAFT_02371 at 532.468 kb on - strand, within H281DRAFT_02371 at 532.537 kb on - strand at 532.726 kb on - strand at 532.859 kb on - strand at 533.262 kb on + strand, within H281DRAFT_02372 at 533.263 kb on - strand, within H281DRAFT_02372 at 533.706 kb on + strand at 533.706 kb on + strand at 533.707 kb on - strand at 533.710 kb on - strand at 533.710 kb on - strand at 533.719 kb on + strand at 533.720 kb on - strand at 533.738 kb on - strand at 533.738 kb on - strand at 533.738 kb on - strand at 533.866 kb on - strand at 533.866 kb on - strand at 534.322 kb on + strand, within H281DRAFT_02373 at 534.323 kb on - strand, within H281DRAFT_02373 at 534.336 kb on - strand, within H281DRAFT_02373 at 534.388 kb on + strand, within H281DRAFT_02373 at 534.389 kb on - strand, within H281DRAFT_02373 at 534.460 kb on + strand, within H281DRAFT_02373 at 534.460 kb on + strand, within H281DRAFT_02373 at 534.512 kb on + strand, within H281DRAFT_02373
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 531,820 - H281DRAFT_02370 0.65 -0.2 531,830 + H281DRAFT_02370 0.67 +0.1 531,852 + H281DRAFT_02370 0.71 -0.8 531,852 + H281DRAFT_02370 0.71 -0.0 531,922 + H281DRAFT_02370 0.86 +0.1 531,923 - H281DRAFT_02370 0.86 -0.6 532,066 + -0.4 532,237 + H281DRAFT_02371 0.40 -0.5 532,238 - H281DRAFT_02371 0.41 +0.8 532,238 - H281DRAFT_02371 0.41 -0.5 532,238 - H281DRAFT_02371 0.41 -0.4 532,333 + H281DRAFT_02371 0.58 -0.2 532,333 + H281DRAFT_02371 0.58 +0.3 532,336 + H281DRAFT_02371 0.59 +0.4 532,336 + H281DRAFT_02371 0.59 -0.3 532,337 - H281DRAFT_02371 0.59 +0.5 532,372 + H281DRAFT_02371 0.66 -0.8 532,373 - H281DRAFT_02371 0.66 +0.0 532,467 + H281DRAFT_02371 0.83 +0.1 532,468 - H281DRAFT_02371 0.83 +0.4 532,537 - +0.4 532,726 - -0.2 532,859 - +0.5 533,262 + H281DRAFT_02372 0.51 -0.8 533,263 - H281DRAFT_02372 0.52 -1.0 533,706 + -0.9 533,706 + -1.2 533,707 - -0.0 533,710 - +0.4 533,710 - -1.5 533,719 + -1.3 533,720 - -1.3 533,738 - -1.3 533,738 - -1.3 533,738 - -1.4 533,866 - -0.5 533,866 - -1.4 534,322 + H281DRAFT_02373 0.30 -1.5 534,323 - H281DRAFT_02373 0.31 -0.4 534,336 - H281DRAFT_02373 0.31 -1.3 534,388 + H281DRAFT_02373 0.35 -0.2 534,389 - H281DRAFT_02373 0.35 -1.5 534,460 + H281DRAFT_02373 0.39 -0.9 534,460 + H281DRAFT_02373 0.39 -1.4 534,512 + H281DRAFT_02373 0.43 -1.0
Or see this region's nucleotide sequence