Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02117 and H281DRAFT_02118 overlap by 4 nucleotides H281DRAFT_02118 and H281DRAFT_02119 are separated by 131 nucleotides H281DRAFT_02119 and H281DRAFT_02120 are separated by 59 nucleotides H281DRAFT_02120 and H281DRAFT_02121 are separated by 238 nucleotides
H281DRAFT_02117: H281DRAFT_02117 - Mannose or cellobiose epimerase, N-acyl-D-glucosamine 2-epimerase family, at 247,015 to 248,298
_02117
H281DRAFT_02118: H281DRAFT_02118 - fructokinase, at 248,295 to 249,206
_02118
H281DRAFT_02119: H281DRAFT_02119 - hypothetical protein, at 249,338 to 249,568
_02119
H281DRAFT_02120: H281DRAFT_02120 - hypothetical protein, at 249,628 to 249,873
_02120
H281DRAFT_02121: H281DRAFT_02121 - inward rectifier potassium channel, at 250,112 to 251,074
_02121
Position (kb) 248
249
250 Strain fitness (log2 ratio) -2
-1
0
1 at 247.352 kb on - strand, within H281DRAFT_02117 at 247.414 kb on + strand, within H281DRAFT_02117 at 247.582 kb on + strand, within H281DRAFT_02117 at 247.657 kb on + strand, within H281DRAFT_02117 at 247.658 kb on - strand, within H281DRAFT_02117 at 247.768 kb on + strand, within H281DRAFT_02117 at 247.769 kb on - strand, within H281DRAFT_02117 at 247.769 kb on - strand, within H281DRAFT_02117 at 247.769 kb on - strand, within H281DRAFT_02117 at 247.864 kb on + strand, within H281DRAFT_02117 at 247.954 kb on + strand, within H281DRAFT_02117 at 247.957 kb on + strand, within H281DRAFT_02117 at 247.958 kb on - strand, within H281DRAFT_02117 at 248.000 kb on - strand at 248.081 kb on - strand, within H281DRAFT_02117 at 248.081 kb on - strand, within H281DRAFT_02117 at 248.100 kb on + strand, within H281DRAFT_02117 at 248.100 kb on + strand, within H281DRAFT_02117 at 248.100 kb on + strand, within H281DRAFT_02117 at 248.170 kb on + strand at 248.171 kb on - strand at 248.227 kb on + strand at 248.227 kb on + strand at 248.228 kb on - strand at 248.593 kb on - strand, within H281DRAFT_02118 at 248.593 kb on - strand, within H281DRAFT_02118 at 248.762 kb on - strand, within H281DRAFT_02118 at 248.809 kb on - strand, within H281DRAFT_02118 at 249.036 kb on - strand, within H281DRAFT_02118 at 249.204 kb on + strand at 249.219 kb on - strand at 249.296 kb on + strand at 249.297 kb on - strand at 249.354 kb on - strand at 249.368 kb on + strand, within H281DRAFT_02119 at 249.368 kb on + strand, within H281DRAFT_02119 at 249.368 kb on + strand, within H281DRAFT_02119 at 249.369 kb on - strand, within H281DRAFT_02119 at 249.420 kb on + strand, within H281DRAFT_02119 at 249.420 kb on + strand, within H281DRAFT_02119 at 249.421 kb on - strand, within H281DRAFT_02119 at 249.421 kb on - strand, within H281DRAFT_02119 at 249.476 kb on + strand, within H281DRAFT_02119 at 249.477 kb on - strand, within H281DRAFT_02119 at 249.477 kb on - strand, within H281DRAFT_02119 at 249.477 kb on - strand, within H281DRAFT_02119 at 249.490 kb on + strand, within H281DRAFT_02119 at 249.491 kb on - strand, within H281DRAFT_02119 at 249.712 kb on + strand, within H281DRAFT_02120 at 249.775 kb on + strand, within H281DRAFT_02120 at 249.922 kb on - strand at 250.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 247,352 - H281DRAFT_02117 0.26 -1.3 247,414 + H281DRAFT_02117 0.31 -0.3 247,582 + H281DRAFT_02117 0.44 -0.5 247,657 + H281DRAFT_02117 0.50 -1.1 247,658 - H281DRAFT_02117 0.50 -0.8 247,768 + H281DRAFT_02117 0.59 +0.6 247,769 - H281DRAFT_02117 0.59 -0.8 247,769 - H281DRAFT_02117 0.59 -0.7 247,769 - H281DRAFT_02117 0.59 -0.2 247,864 + H281DRAFT_02117 0.66 -0.6 247,954 + H281DRAFT_02117 0.73 -0.6 247,957 + H281DRAFT_02117 0.73 -0.2 247,958 - H281DRAFT_02117 0.73 -0.2 248,000 - -0.3 248,081 - H281DRAFT_02117 0.83 -1.3 248,081 - H281DRAFT_02117 0.83 -1.1 248,100 + H281DRAFT_02117 0.85 -0.1 248,100 + H281DRAFT_02117 0.85 -0.9 248,100 + H281DRAFT_02117 0.85 +0.2 248,170 + -1.2 248,171 - -1.2 248,227 + -0.5 248,227 + -0.5 248,228 - -1.0 248,593 - H281DRAFT_02118 0.33 -2.2 248,593 - H281DRAFT_02118 0.33 -2.4 248,762 - H281DRAFT_02118 0.51 -1.0 248,809 - H281DRAFT_02118 0.56 -1.7 249,036 - H281DRAFT_02118 0.81 -2.0 249,204 + -0.6 249,219 - -0.2 249,296 + -0.4 249,297 - -0.1 249,354 - -0.5 249,368 + H281DRAFT_02119 0.13 -0.2 249,368 + H281DRAFT_02119 0.13 +1.5 249,368 + H281DRAFT_02119 0.13 -0.3 249,369 - H281DRAFT_02119 0.13 +0.0 249,420 + H281DRAFT_02119 0.35 +0.3 249,420 + H281DRAFT_02119 0.35 -0.3 249,421 - H281DRAFT_02119 0.36 +0.7 249,421 - H281DRAFT_02119 0.36 +1.4 249,476 + H281DRAFT_02119 0.60 +0.0 249,477 - H281DRAFT_02119 0.60 +0.1 249,477 - H281DRAFT_02119 0.60 +0.6 249,477 - H281DRAFT_02119 0.60 -0.3 249,490 + H281DRAFT_02119 0.66 -1.5 249,491 - H281DRAFT_02119 0.66 -0.1 249,712 + H281DRAFT_02120 0.34 -0.2 249,775 + H281DRAFT_02120 0.60 +0.8 249,922 - +0.4 250,078 - +0.0
Or see this region's nucleotide sequence