Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01804 and H281DRAFT_01805 are separated by 122 nucleotides H281DRAFT_01805 and H281DRAFT_01806 are separated by 224 nucleotides
H281DRAFT_01804: H281DRAFT_01804 - Predicted arabinose efflux permease, MFS family, at 704,505 to 705,749
_01804
H281DRAFT_01805: H281DRAFT_01805 - cardiolipin synthase, at 705,872 to 707,227
_01805
H281DRAFT_01806: H281DRAFT_01806 - Nucleoside-diphosphate-sugar epimerase, at 707,452 to 708,519
_01806
Position (kb) 705
706
707
708 Strain fitness (log2 ratio) -2
-1
0
1
2 at 704.922 kb on + strand, within H281DRAFT_01804 at 704.922 kb on + strand, within H281DRAFT_01804 at 704.923 kb on - strand, within H281DRAFT_01804 at 705.440 kb on + strand, within H281DRAFT_01804 at 705.582 kb on + strand, within H281DRAFT_01804 at 705.582 kb on + strand, within H281DRAFT_01804 at 705.630 kb on - strand at 705.638 kb on - strand at 705.638 kb on - strand at 705.748 kb on - strand at 705.751 kb on + strand at 705.751 kb on + strand at 705.918 kb on + strand at 706.158 kb on + strand, within H281DRAFT_01805 at 706.159 kb on - strand, within H281DRAFT_01805 at 706.197 kb on + strand, within H281DRAFT_01805 at 706.238 kb on + strand, within H281DRAFT_01805 at 706.691 kb on - strand, within H281DRAFT_01805 at 706.739 kb on + strand, within H281DRAFT_01805 at 706.740 kb on - strand, within H281DRAFT_01805 at 706.791 kb on - strand, within H281DRAFT_01805 at 706.973 kb on + strand, within H281DRAFT_01805 at 706.973 kb on + strand, within H281DRAFT_01805 at 706.973 kb on + strand, within H281DRAFT_01805 at 706.974 kb on - strand, within H281DRAFT_01805 at 706.974 kb on - strand, within H281DRAFT_01805 at 707.004 kb on - strand, within H281DRAFT_01805 at 707.079 kb on - strand, within H281DRAFT_01805 at 707.079 kb on - strand, within H281DRAFT_01805 at 707.146 kb on + strand at 707.146 kb on + strand at 707.147 kb on - strand at 707.443 kb on - strand at 707.794 kb on + strand, within H281DRAFT_01806 at 707.887 kb on + strand, within H281DRAFT_01806 at 707.926 kb on + strand, within H281DRAFT_01806 at 707.927 kb on - strand, within H281DRAFT_01806
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 704,922 + H281DRAFT_01804 0.33 -0.4 704,922 + H281DRAFT_01804 0.33 -0.1 704,923 - H281DRAFT_01804 0.34 +1.0 705,440 + H281DRAFT_01804 0.75 -0.8 705,582 + H281DRAFT_01804 0.87 -1.0 705,582 + H281DRAFT_01804 0.87 +0.0 705,630 - -0.5 705,638 - +0.2 705,638 - +0.6 705,748 - +1.8 705,751 + +0.7 705,751 + +0.0 705,918 + +0.4 706,158 + H281DRAFT_01805 0.21 +1.0 706,159 - H281DRAFT_01805 0.21 +1.0 706,197 + H281DRAFT_01805 0.24 -0.1 706,238 + H281DRAFT_01805 0.27 +0.1 706,691 - H281DRAFT_01805 0.60 +0.1 706,739 + H281DRAFT_01805 0.64 +0.3 706,740 - H281DRAFT_01805 0.64 +0.6 706,791 - H281DRAFT_01805 0.68 -0.0 706,973 + H281DRAFT_01805 0.81 -0.2 706,973 + H281DRAFT_01805 0.81 -0.1 706,973 + H281DRAFT_01805 0.81 +0.3 706,974 - H281DRAFT_01805 0.81 +0.2 706,974 - H281DRAFT_01805 0.81 -2.5 707,004 - H281DRAFT_01805 0.83 -0.3 707,079 - H281DRAFT_01805 0.89 -0.6 707,079 - H281DRAFT_01805 0.89 +0.2 707,146 + -0.2 707,146 + -0.2 707,147 - +0.3 707,443 - -0.2 707,794 + H281DRAFT_01806 0.32 +0.2 707,887 + H281DRAFT_01806 0.41 -0.3 707,926 + H281DRAFT_01806 0.44 +0.7 707,927 - H281DRAFT_01806 0.44 -0.4
Or see this region's nucleotide sequence