Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01800 and H281DRAFT_01801 are separated by 93 nucleotides H281DRAFT_01801 and H281DRAFT_01802 are separated by 30 nucleotides
H281DRAFT_01800: H281DRAFT_01800 - transcriptional regulator, LysR family, at 700,569 to 701,471
_01800
H281DRAFT_01801: H281DRAFT_01801 - Predicted arabinose efflux permease, MFS family, at 701,565 to 702,827
_01801
H281DRAFT_01802: H281DRAFT_01802 - Pimeloyl-ACP methyl ester carboxylesterase, at 702,858 to 703,739
_01802
Position (kb) 701
702
703 Strain fitness (log2 ratio) -2
-1
0
1 at 700.568 kb on - strand at 700.571 kb on - strand at 700.571 kb on - strand at 700.571 kb on - strand at 700.684 kb on + strand, within H281DRAFT_01800 at 700.742 kb on - strand, within H281DRAFT_01800 at 701.075 kb on - strand, within H281DRAFT_01800 at 701.075 kb on - strand, within H281DRAFT_01800 at 701.075 kb on - strand, within H281DRAFT_01800 at 701.149 kb on + strand, within H281DRAFT_01800 at 701.209 kb on + strand, within H281DRAFT_01800 at 701.291 kb on + strand, within H281DRAFT_01800 at 701.312 kb on + strand, within H281DRAFT_01800 at 701.527 kb on + strand at 701.527 kb on + strand at 701.527 kb on + strand at 701.628 kb on + strand at 701.629 kb on - strand at 701.654 kb on - strand at 702.075 kb on + strand, within H281DRAFT_01801 at 702.076 kb on - strand, within H281DRAFT_01801 at 702.079 kb on - strand, within H281DRAFT_01801 at 702.158 kb on + strand, within H281DRAFT_01801 at 702.159 kb on - strand, within H281DRAFT_01801 at 702.511 kb on + strand, within H281DRAFT_01801 at 702.876 kb on - strand at 703.090 kb on - strand, within H281DRAFT_01802 at 703.162 kb on + strand, within H281DRAFT_01802 at 703.163 kb on - strand, within H281DRAFT_01802 at 703.408 kb on - strand, within H281DRAFT_01802 at 703.513 kb on - strand, within H281DRAFT_01802 at 703.576 kb on - strand, within H281DRAFT_01802 at 703.576 kb on - strand, within H281DRAFT_01802 at 703.611 kb on + strand, within H281DRAFT_01802 at 703.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 700,568 - -0.1 700,571 - -0.7 700,571 - -0.8 700,571 - -0.1 700,684 + H281DRAFT_01800 0.13 -1.0 700,742 - H281DRAFT_01800 0.19 -0.1 701,075 - H281DRAFT_01800 0.56 -0.4 701,075 - H281DRAFT_01800 0.56 +0.1 701,075 - H281DRAFT_01800 0.56 +0.3 701,149 + H281DRAFT_01800 0.64 +0.2 701,209 + H281DRAFT_01800 0.71 +0.9 701,291 + H281DRAFT_01800 0.80 -0.4 701,312 + H281DRAFT_01800 0.82 +0.3 701,527 + +0.2 701,527 + +0.1 701,527 + -1.8 701,628 + +0.6 701,629 - -0.6 701,654 - -0.2 702,075 + H281DRAFT_01801 0.40 -0.0 702,076 - H281DRAFT_01801 0.40 -0.3 702,079 - H281DRAFT_01801 0.41 +0.6 702,158 + H281DRAFT_01801 0.47 +1.0 702,159 - H281DRAFT_01801 0.47 +1.4 702,511 + H281DRAFT_01801 0.75 -0.4 702,876 - +0.1 703,090 - H281DRAFT_01802 0.26 -0.5 703,162 + H281DRAFT_01802 0.34 -1.5 703,163 - H281DRAFT_01802 0.35 -0.2 703,408 - H281DRAFT_01802 0.62 +0.2 703,513 - H281DRAFT_01802 0.74 +0.1 703,576 - H281DRAFT_01802 0.81 +1.2 703,576 - H281DRAFT_01802 0.81 +0.7 703,611 + H281DRAFT_01802 0.85 +0.1 703,808 - +0.6
Or see this region's nucleotide sequence