Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00686 and H281DRAFT_00687 are separated by 875 nucleotides H281DRAFT_00687 and H281DRAFT_00688 are separated by 171 nucleotides
H281DRAFT_00686: H281DRAFT_00686 - CHAD domain-containing protein, at 767,426 to 768,259
_00686
H281DRAFT_00687: H281DRAFT_00687 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 769,135 to 769,575
_00687
H281DRAFT_00688: H281DRAFT_00688 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 769,747 to 771,585
_00688
Position (kb) 769
770 Strain fitness (log2 ratio) -1
0
1 at 768.290 kb on + strand at 768.371 kb on + strand at 768.375 kb on - strand at 768.530 kb on - strand at 768.533 kb on + strand at 768.533 kb on + strand at 768.689 kb on - strand at 768.692 kb on - strand at 768.692 kb on - strand at 768.832 kb on + strand at 768.832 kb on + strand at 768.908 kb on - strand at 769.065 kb on + strand at 769.179 kb on + strand, within H281DRAFT_00687 at 769.349 kb on - strand at 769.590 kb on - strand at 769.590 kb on - strand at 769.704 kb on + strand at 769.705 kb on - strand at 769.705 kb on - strand at 769.709 kb on + strand at 769.918 kb on + strand at 769.968 kb on - strand, within H281DRAFT_00688 at 770.297 kb on - strand, within H281DRAFT_00688 at 770.310 kb on + strand, within H281DRAFT_00688 at 770.408 kb on + strand, within H281DRAFT_00688 at 770.471 kb on + strand, within H281DRAFT_00688 at 770.501 kb on + strand, within H281DRAFT_00688
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 768,290 + -1.2 768,371 + -0.5 768,375 - -0.7 768,530 - +0.5 768,533 + +0.4 768,533 + -0.8 768,689 - -0.3 768,692 - +0.0 768,692 - -0.5 768,832 + +0.6 768,832 + -0.3 768,908 - -0.2 769,065 + +0.1 769,179 + H281DRAFT_00687 0.10 +0.2 769,349 - +0.2 769,590 - -0.6 769,590 - +0.3 769,704 + +0.8 769,705 - +0.5 769,705 - -0.5 769,709 + -0.2 769,918 + -0.2 769,968 - H281DRAFT_00688 0.12 -0.1 770,297 - H281DRAFT_00688 0.30 -0.0 770,310 + H281DRAFT_00688 0.31 +1.0 770,408 + H281DRAFT_00688 0.36 -0.5 770,471 + H281DRAFT_00688 0.39 +0.7 770,501 + H281DRAFT_00688 0.41 -0.2
Or see this region's nucleotide sequence