Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00255 and H281DRAFT_00256 are separated by 201 nucleotides H281DRAFT_00256 and H281DRAFT_00257 are separated by 226 nucleotides H281DRAFT_00257 and H281DRAFT_00258 are separated by 158 nucleotides H281DRAFT_00258 and H281DRAFT_00259 are separated by 67 nucleotides
H281DRAFT_00255: H281DRAFT_00255 - hypothetical protein, at 270,872 to 271,198
_00255
H281DRAFT_00256: H281DRAFT_00256 - CsbD-like, at 271,400 to 271,591
_00256
H281DRAFT_00257: H281DRAFT_00257 - hypothetical protein, at 271,818 to 272,039
_00257
H281DRAFT_00258: H281DRAFT_00258 - glutathione S-transferase, at 272,198 to 272,902
_00258
H281DRAFT_00259: H281DRAFT_00259 - hypothetical protein, at 272,970 to 274,070
_00259
Position (kb) 272
273 Strain fitness (log2 ratio) -2
-1
0
1
2 at 271.216 kb on + strand at 271.216 kb on + strand at 271.216 kb on + strand at 271.242 kb on + strand at 271.356 kb on - strand at 271.356 kb on - strand at 271.385 kb on + strand at 271.417 kb on - strand at 272.096 kb on + strand at 272.097 kb on - strand at 272.097 kb on - strand at 272.098 kb on + strand at 272.099 kb on - strand at 272.188 kb on - strand at 272.267 kb on + strand at 272.331 kb on - strand, within H281DRAFT_00258 at 272.483 kb on + strand, within H281DRAFT_00258 at 272.483 kb on + strand, within H281DRAFT_00258 at 272.655 kb on - strand, within H281DRAFT_00258 at 272.732 kb on + strand, within H281DRAFT_00258 at 272.787 kb on - strand, within H281DRAFT_00258 at 272.812 kb on - strand, within H281DRAFT_00258 at 272.957 kb on + strand at 272.957 kb on + strand at 273.102 kb on + strand, within H281DRAFT_00259 at 273.102 kb on + strand, within H281DRAFT_00259 at 273.103 kb on - strand, within H281DRAFT_00259 at 273.276 kb on + strand, within H281DRAFT_00259 at 273.372 kb on + strand, within H281DRAFT_00259 at 273.373 kb on - strand, within H281DRAFT_00259 at 273.373 kb on - strand, within H281DRAFT_00259 at 273.582 kb on - strand, within H281DRAFT_00259 at 273.608 kb on - strand, within H281DRAFT_00259 at 273.634 kb on - strand, within H281DRAFT_00259 at 273.843 kb on + strand, within H281DRAFT_00259 at 273.852 kb on + strand, within H281DRAFT_00259
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 271,216 + +0.2 271,216 + +0.1 271,216 + +1.6 271,242 + -0.3 271,356 - +0.0 271,356 - +0.1 271,385 + +0.5 271,417 - +0.6 272,096 + +0.7 272,097 - -0.1 272,097 - -0.2 272,098 + -0.2 272,099 - +0.7 272,188 - -0.8 272,267 + -1.3 272,331 - H281DRAFT_00258 0.19 -0.2 272,483 + H281DRAFT_00258 0.40 +0.1 272,483 + H281DRAFT_00258 0.40 -0.1 272,655 - H281DRAFT_00258 0.65 -0.9 272,732 + H281DRAFT_00258 0.76 -0.2 272,787 - H281DRAFT_00258 0.84 -0.5 272,812 - H281DRAFT_00258 0.87 -0.2 272,957 + +0.0 272,957 + -1.8 273,102 + H281DRAFT_00259 0.12 -0.6 273,102 + H281DRAFT_00259 0.12 +0.7 273,103 - H281DRAFT_00259 0.12 -0.2 273,276 + H281DRAFT_00259 0.28 -0.7 273,372 + H281DRAFT_00259 0.37 +0.2 273,373 - H281DRAFT_00259 0.37 -0.9 273,373 - H281DRAFT_00259 0.37 +0.2 273,582 - H281DRAFT_00259 0.56 -0.7 273,608 - H281DRAFT_00259 0.58 +2.6 273,634 - H281DRAFT_00259 0.60 +0.2 273,843 + H281DRAFT_00259 0.79 +0.0 273,852 + H281DRAFT_00259 0.80 +0.2
Or see this region's nucleotide sequence