Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00050 and H281DRAFT_00051 are separated by 7 nucleotides H281DRAFT_00051 and H281DRAFT_00052 are separated by 562 nucleotides H281DRAFT_00052 and H281DRAFT_00053 are separated by 648 nucleotides
H281DRAFT_00050: H281DRAFT_00050 - Uncharacterized conserved protein, DUF1330 family, at 51,775 to 52,086
_00050
H281DRAFT_00051: H281DRAFT_00051 - hypothetical protein, at 52,094 to 52,246
_00051
H281DRAFT_00052: H281DRAFT_00052 - protein of unknown function (DUF3331), at 52,809 to 53,273
_00052
H281DRAFT_00053: H281DRAFT_00053 - catalase-peroxidase, at 53,922 to 56,183
_00053
Position (kb) 52
53
54 Strain fitness (log2 ratio) -1
0
1 at 52.031 kb on + strand, within H281DRAFT_00050 at 52.213 kb on + strand, within H281DRAFT_00051 at 52.232 kb on - strand at 52.293 kb on - strand at 52.317 kb on + strand at 52.345 kb on + strand at 52.354 kb on + strand at 52.354 kb on + strand at 52.409 kb on + strand at 52.409 kb on + strand at 52.463 kb on - strand at 52.495 kb on + strand at 52.496 kb on - strand at 52.576 kb on + strand at 52.806 kb on - strand at 53.048 kb on - strand, within H281DRAFT_00052 at 53.119 kb on - strand, within H281DRAFT_00052 at 53.302 kb on + strand at 53.375 kb on - strand at 53.532 kb on - strand at 53.543 kb on - strand at 53.864 kb on - strand at 53.864 kb on - strand at 53.915 kb on + strand at 53.916 kb on - strand at 53.930 kb on + strand at 54.216 kb on - strand, within H281DRAFT_00053
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 52,031 + H281DRAFT_00050 0.82 -0.0 52,213 + H281DRAFT_00051 0.78 -0.3 52,232 - +0.9 52,293 - +0.1 52,317 + +0.2 52,345 + -0.4 52,354 + -0.1 52,354 + -0.4 52,409 + +0.3 52,409 + +0.2 52,463 - -0.1 52,495 + +0.3 52,496 - +0.1 52,576 + +0.0 52,806 - -0.1 53,048 - H281DRAFT_00052 0.51 +0.7 53,119 - H281DRAFT_00052 0.67 -0.1 53,302 + +0.5 53,375 - +0.2 53,532 - -1.0 53,543 - +0.1 53,864 - -0.1 53,864 - +0.3 53,915 + +0.2 53,916 - -0.4 53,930 + -1.1 54,216 - H281DRAFT_00053 0.13 +0.1
Or see this region's nucleotide sequence