Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06270 and H281DRAFT_06271 are separated by 81 nucleotides H281DRAFT_06271 and H281DRAFT_06272 are separated by 9 nucleotides H281DRAFT_06272 and H281DRAFT_06273 overlap by 4 nucleotides
H281DRAFT_06270: H281DRAFT_06270 - signal recognition particle subunit FFH/SRP54 (srp54), at 50,903 to 52,270
_06270
H281DRAFT_06271: H281DRAFT_06271 - ABC-type uncharacterized transport system, permease component, at 52,352 to 53,305
_06271
H281DRAFT_06272: H281DRAFT_06272 - uncharacterized protein, at 53,315 to 53,632
_06272
H281DRAFT_06273: H281DRAFT_06273 - AmpD protein, at 53,629 to 54,225
_06273
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 52.336 kb on - strand at 52.336 kb on - strand at 52.341 kb on - strand at 52.352 kb on - strand at 52.362 kb on + strand at 52.362 kb on + strand at 52.362 kb on + strand at 52.362 kb on + strand at 52.362 kb on + strand at 52.362 kb on + strand at 52.362 kb on + strand at 52.362 kb on + strand at 52.362 kb on + strand at 52.363 kb on - strand at 52.363 kb on - strand at 52.363 kb on - strand at 52.363 kb on - strand at 52.363 kb on - strand at 52.367 kb on + strand at 52.367 kb on + strand at 52.367 kb on + strand at 52.367 kb on + strand at 52.368 kb on - strand at 52.368 kb on - strand at 52.682 kb on + strand, within H281DRAFT_06271 at 52.682 kb on + strand, within H281DRAFT_06271 at 52.682 kb on + strand, within H281DRAFT_06271 at 52.682 kb on + strand, within H281DRAFT_06271 at 52.683 kb on - strand, within H281DRAFT_06271 at 52.683 kb on - strand, within H281DRAFT_06271 at 52.683 kb on - strand, within H281DRAFT_06271 at 52.847 kb on + strand, within H281DRAFT_06271 at 52.848 kb on - strand, within H281DRAFT_06271 at 52.848 kb on - strand, within H281DRAFT_06271 at 53.298 kb on + strand at 53.298 kb on + strand at 53.340 kb on + strand at 53.340 kb on + strand at 53.341 kb on - strand at 53.341 kb on - strand at 53.341 kb on - strand at 53.537 kb on - strand, within H281DRAFT_06272 at 53.831 kb on - strand, within H281DRAFT_06273 at 53.833 kb on + strand, within H281DRAFT_06273 at 54.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 52,336 - -0.5 52,336 - -1.6 52,341 - +0.6 52,352 - -1.0 52,362 + -0.5 52,362 + -0.6 52,362 + +0.1 52,362 + -0.4 52,362 + -1.1 52,362 + -1.0 52,362 + -0.2 52,362 + +0.1 52,362 + -0.2 52,363 - -0.4 52,363 - -0.7 52,363 - -1.4 52,363 - -1.9 52,363 - +0.1 52,367 + +0.2 52,367 + -1.0 52,367 + +3.3 52,367 + -0.3 52,368 - -2.2 52,368 - -1.7 52,682 + H281DRAFT_06271 0.35 -1.5 52,682 + H281DRAFT_06271 0.35 -1.0 52,682 + H281DRAFT_06271 0.35 -1.4 52,682 + H281DRAFT_06271 0.35 -0.1 52,683 - H281DRAFT_06271 0.35 -1.0 52,683 - H281DRAFT_06271 0.35 -0.5 52,683 - H281DRAFT_06271 0.35 -2.0 52,847 + H281DRAFT_06271 0.52 -0.5 52,848 - H281DRAFT_06271 0.52 -1.3 52,848 - H281DRAFT_06271 0.52 -0.8 53,298 + -0.2 53,298 + +0.0 53,340 + -0.6 53,340 + -1.0 53,341 - -2.9 53,341 - -1.4 53,341 - -1.5 53,537 - H281DRAFT_06272 0.70 -2.2 53,831 - H281DRAFT_06273 0.34 -3.0 53,833 + H281DRAFT_06273 0.34 -2.9 54,200 - +0.0
Or see this region's nucleotide sequence