Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06111 and H281DRAFT_06112 are separated by 68 nucleotides H281DRAFT_06112 and H281DRAFT_06113 are separated by 22 nucleotides H281DRAFT_06113 and H281DRAFT_06114 are separated by 272 nucleotides H281DRAFT_06114 and H281DRAFT_06115 are separated by 144 nucleotides
H281DRAFT_06111: H281DRAFT_06111 - Sugar phosphate permease, at 130,315 to 131,652
_06111
H281DRAFT_06112: H281DRAFT_06112 - Predicted xylanase/chitin deacetylase, at 131,721 to 132,602
_06112
H281DRAFT_06113: H281DRAFT_06113 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 132,625 to 134,001
_06113
H281DRAFT_06114: H281DRAFT_06114 - Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family, at 134,274 to 134,525
_06114
H281DRAFT_06115: H281DRAFT_06115 - Protein of unknown function (DUF1479), at 134,670 to 135,920
_06115
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -1
0
1
2 at 131.633 kb on + strand at 131.634 kb on - strand at 131.881 kb on - strand, within H281DRAFT_06112 at 131.887 kb on + strand, within H281DRAFT_06112 at 131.887 kb on + strand, within H281DRAFT_06112 at 131.888 kb on - strand, within H281DRAFT_06112 at 131.888 kb on - strand, within H281DRAFT_06112 at 132.077 kb on + strand, within H281DRAFT_06112 at 132.077 kb on + strand, within H281DRAFT_06112 at 132.078 kb on - strand, within H281DRAFT_06112 at 132.078 kb on - strand, within H281DRAFT_06112 at 132.130 kb on + strand, within H281DRAFT_06112 at 132.131 kb on - strand, within H281DRAFT_06112 at 132.131 kb on - strand, within H281DRAFT_06112 at 132.131 kb on - strand, within H281DRAFT_06112 at 132.134 kb on - strand, within H281DRAFT_06112 at 132.535 kb on + strand at 132.536 kb on - strand at 132.536 kb on - strand at 132.715 kb on - strand at 133.345 kb on - strand, within H281DRAFT_06113 at 133.435 kb on + strand, within H281DRAFT_06113 at 133.435 kb on + strand, within H281DRAFT_06113 at 133.435 kb on + strand, within H281DRAFT_06113 at 133.435 kb on + strand, within H281DRAFT_06113 at 133.436 kb on - strand, within H281DRAFT_06113 at 133.436 kb on - strand, within H281DRAFT_06113 at 133.950 kb on - strand at 133.953 kb on + strand at 133.954 kb on - strand at 133.954 kb on - strand at 133.954 kb on - strand at 133.954 kb on - strand at 134.088 kb on + strand at 134.088 kb on + strand at 134.195 kb on - strand at 134.235 kb on + strand at 134.250 kb on + strand at 134.250 kb on + strand at 134.251 kb on - strand at 134.409 kb on + strand, within H281DRAFT_06114 at 134.433 kb on + strand, within H281DRAFT_06114 at 134.500 kb on - strand at 134.632 kb on + strand at 134.632 kb on + strand at 134.860 kb on + strand, within H281DRAFT_06115 at 134.860 kb on + strand, within H281DRAFT_06115 at 134.860 kb on + strand, within H281DRAFT_06115 at 134.861 kb on - strand, within H281DRAFT_06115 at 134.861 kb on - strand, within H281DRAFT_06115 at 134.861 kb on - strand, within H281DRAFT_06115 at 134.861 kb on - strand, within H281DRAFT_06115 at 134.875 kb on + strand, within H281DRAFT_06115
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 131,633 + +0.6 131,634 - -0.3 131,881 - H281DRAFT_06112 0.18 -0.1 131,887 + H281DRAFT_06112 0.19 +0.6 131,887 + H281DRAFT_06112 0.19 +0.3 131,888 - H281DRAFT_06112 0.19 -0.5 131,888 - H281DRAFT_06112 0.19 +0.2 132,077 + H281DRAFT_06112 0.40 +0.8 132,077 + H281DRAFT_06112 0.40 -0.0 132,078 - H281DRAFT_06112 0.40 -0.1 132,078 - H281DRAFT_06112 0.40 +0.0 132,130 + H281DRAFT_06112 0.46 -0.8 132,131 - H281DRAFT_06112 0.46 -0.9 132,131 - H281DRAFT_06112 0.46 -0.2 132,131 - H281DRAFT_06112 0.46 -0.1 132,134 - H281DRAFT_06112 0.47 +0.2 132,535 + +1.5 132,536 - +0.7 132,536 - +0.5 132,715 - +1.1 133,345 - H281DRAFT_06113 0.52 +0.6 133,435 + H281DRAFT_06113 0.59 +2.1 133,435 + H281DRAFT_06113 0.59 +0.6 133,435 + H281DRAFT_06113 0.59 +0.4 133,435 + H281DRAFT_06113 0.59 +0.8 133,436 - H281DRAFT_06113 0.59 +0.4 133,436 - H281DRAFT_06113 0.59 +0.3 133,950 - -0.6 133,953 + -0.3 133,954 - +0.4 133,954 - -0.2 133,954 - +0.4 133,954 - +0.1 134,088 + -0.2 134,088 + +0.3 134,195 - +0.5 134,235 + +0.2 134,250 + -0.1 134,250 + +0.7 134,251 - +0.6 134,409 + H281DRAFT_06114 0.54 +0.1 134,433 + H281DRAFT_06114 0.63 -0.4 134,500 - +0.1 134,632 + +0.1 134,632 + +0.2 134,860 + H281DRAFT_06115 0.15 -1.5 134,860 + H281DRAFT_06115 0.15 +0.2 134,860 + H281DRAFT_06115 0.15 -0.9 134,861 - H281DRAFT_06115 0.15 -0.2 134,861 - H281DRAFT_06115 0.15 -0.1 134,861 - H281DRAFT_06115 0.15 +1.1 134,861 - H281DRAFT_06115 0.15 +0.2 134,875 + H281DRAFT_06115 0.16 +2.2
Or see this region's nucleotide sequence