Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05978 and H281DRAFT_05979 are separated by 88 nucleotides H281DRAFT_05979 and H281DRAFT_05980 are separated by 29 nucleotides H281DRAFT_05980 and H281DRAFT_05981 are separated by 126 nucleotides
H281DRAFT_05978: H281DRAFT_05978 - Sugar lactone lactonase YvrE, at 121,395 to 122,306
_05978
H281DRAFT_05979: H281DRAFT_05979 - transcriptional regulator, TetR family, at 122,395 to 123,219
_05979
H281DRAFT_05980: H281DRAFT_05980 - Catechol 2,3-dioxygenase, at 123,249 to 123,692
_05980
H281DRAFT_05981: H281DRAFT_05981 - transcriptional regulator, LysR family, at 123,819 to 124,688
_05981
Position (kb) 122
123
124 Strain fitness (log2 ratio) -1
0
1
2 at 121.432 kb on + strand at 121.908 kb on + strand, within H281DRAFT_05978 at 121.908 kb on + strand, within H281DRAFT_05978 at 121.909 kb on - strand, within H281DRAFT_05978 at 121.974 kb on + strand, within H281DRAFT_05978 at 122.261 kb on - strand at 122.587 kb on + strand, within H281DRAFT_05979 at 122.854 kb on + strand, within H281DRAFT_05979 at 122.892 kb on + strand, within H281DRAFT_05979 at 122.892 kb on + strand, within H281DRAFT_05979 at 123.068 kb on + strand, within H281DRAFT_05979 at 123.068 kb on + strand, within H281DRAFT_05979 at 123.069 kb on - strand, within H281DRAFT_05979 at 123.245 kb on - strand at 123.379 kb on - strand, within H281DRAFT_05980 at 123.387 kb on + strand, within H281DRAFT_05980 at 123.695 kb on - strand at 123.695 kb on - strand at 123.834 kb on + strand at 123.834 kb on + strand at 123.911 kb on - strand, within H281DRAFT_05981 at 124.011 kb on + strand, within H281DRAFT_05981
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 121,432 + -0.7 121,908 + H281DRAFT_05978 0.56 -0.2 121,908 + H281DRAFT_05978 0.56 -0.4 121,909 - H281DRAFT_05978 0.56 -1.3 121,974 + H281DRAFT_05978 0.63 -1.2 122,261 - +0.3 122,587 + H281DRAFT_05979 0.23 -0.7 122,854 + H281DRAFT_05979 0.56 -0.9 122,892 + H281DRAFT_05979 0.60 -0.1 122,892 + H281DRAFT_05979 0.60 -0.7 123,068 + H281DRAFT_05979 0.82 -0.2 123,068 + H281DRAFT_05979 0.82 +0.2 123,069 - H281DRAFT_05979 0.82 -1.1 123,245 - +0.2 123,379 - H281DRAFT_05980 0.29 -1.3 123,387 + H281DRAFT_05980 0.31 -0.5 123,695 - -0.1 123,695 - +2.3 123,834 + -0.7 123,834 + +0.2 123,911 - H281DRAFT_05981 0.11 +1.1 124,011 + H281DRAFT_05981 0.22 -0.2
Or see this region's nucleotide sequence