Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05957

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05956 and H281DRAFT_05957 overlap by 4 nucleotidesH281DRAFT_05957 and H281DRAFT_05958 are separated by 63 nucleotides H281DRAFT_05956: H281DRAFT_05956 - Predicted arabinose efflux permease, MFS family, at 96,738 to 98,018 _05956 H281DRAFT_05957: H281DRAFT_05957 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 98,015 to 99,010 _05957 H281DRAFT_05958: H281DRAFT_05958 - Outer membrane protein (porin), at 99,074 to 100,225 _05958 Position (kb) 98 99 100Strain fitness (log2 ratio) -2 -1 0 1at 97.052 kb on - strand, within H281DRAFT_05956at 97.259 kb on - strand, within H281DRAFT_05956at 98.047 kb on - strandat 98.476 kb on - strand, within H281DRAFT_05957at 99.116 kb on - strandat 99.196 kb on - strand, within H281DRAFT_05958at 99.321 kb on + strand, within H281DRAFT_05958at 99.321 kb on + strand, within H281DRAFT_05958at 99.321 kb on + strand, within H281DRAFT_05958at 99.427 kb on - strand, within H281DRAFT_05958at 99.564 kb on + strand, within H281DRAFT_05958at 99.789 kb on + strand, within H281DRAFT_05958

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
97,052 - H281DRAFT_05956 0.25 -1.2
97,259 - H281DRAFT_05956 0.41 -1.2
98,047 - +0.6
98,476 - H281DRAFT_05957 0.46 -0.7
99,116 - +0.1
99,196 - H281DRAFT_05958 0.11 +0.6
99,321 + H281DRAFT_05958 0.21 -2.6
99,321 + H281DRAFT_05958 0.21 -0.7
99,321 + H281DRAFT_05958 0.21 +0.3
99,427 - H281DRAFT_05958 0.31 -2.7
99,564 + H281DRAFT_05958 0.43 -0.0
99,789 + H281DRAFT_05958 0.62 -0.2

Or see this region's nucleotide sequence