Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05787

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05786 and H281DRAFT_05787 are separated by 236 nucleotidesH281DRAFT_05787 and H281DRAFT_05788 are separated by 239 nucleotidesH281DRAFT_05788 and H281DRAFT_05789 overlap by 4 nucleotides H281DRAFT_05786: H281DRAFT_05786 - flagellar M-ring protein FliF, at 59,192 to 60,991 _05786 H281DRAFT_05787: H281DRAFT_05787 - flagellar hook-basal body complex protein FliE, at 61,228 to 61,578 _05787 H281DRAFT_05788: H281DRAFT_05788 - flagellar protein FliS, at 61,818 to 62,252 _05788 H281DRAFT_05789: H281DRAFT_05789 - flagellar protein FliT, at 62,249 to 62,575 _05789 Position (kb) 61 62Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 60.377 kb on + strand, within H281DRAFT_05786at 60.377 kb on + strand, within H281DRAFT_05786at 60.383 kb on + strand, within H281DRAFT_05786at 60.384 kb on - strand, within H281DRAFT_05786at 60.480 kb on + strand, within H281DRAFT_05786at 60.481 kb on - strand, within H281DRAFT_05786at 60.481 kb on - strand, within H281DRAFT_05786at 60.645 kb on + strand, within H281DRAFT_05786at 60.646 kb on - strand, within H281DRAFT_05786at 60.724 kb on - strand, within H281DRAFT_05786at 60.724 kb on - strand, within H281DRAFT_05786at 61.058 kb on - strandat 61.067 kb on + strandat 61.138 kb on - strandat 61.169 kb on + strandat 61.170 kb on - strandat 61.170 kb on - strandat 61.170 kb on - strandat 61.170 kb on - strandat 61.550 kb on - strandat 61.737 kb on + strandat 61.737 kb on + strandat 61.737 kb on + strandat 61.737 kb on + strandat 61.737 kb on + strandat 61.737 kb on + strandat 61.738 kb on - strandat 61.738 kb on - strandat 61.793 kb on + strandat 61.793 kb on + strandat 61.793 kb on + strandat 61.793 kb on + strandat 61.793 kb on + strandat 61.793 kb on + strandat 61.794 kb on - strandat 61.851 kb on + strandat 61.852 kb on - strandat 61.917 kb on + strand, within H281DRAFT_05788at 61.917 kb on + strand, within H281DRAFT_05788at 62.086 kb on + strand, within H281DRAFT_05788at 62.086 kb on + strand, within H281DRAFT_05788at 62.086 kb on + strand, within H281DRAFT_05788at 62.087 kb on - strand, within H281DRAFT_05788at 62.087 kb on - strand, within H281DRAFT_05788at 62.088 kb on + strand, within H281DRAFT_05788at 62.088 kb on + strand, within H281DRAFT_05788at 62.088 kb on + strand, within H281DRAFT_05788at 62.089 kb on - strand, within H281DRAFT_05788at 62.090 kb on + strandat 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.095 kb on - strand, within H281DRAFT_05788at 62.095 kb on - strand, within H281DRAFT_05788at 62.096 kb on + strand, within H281DRAFT_05788at 62.096 kb on + strand, within H281DRAFT_05788at 62.096 kb on + strand, within H281DRAFT_05788at 62.096 kb on + strand, within H281DRAFT_05788at 62.096 kb on + strand, within H281DRAFT_05788at 62.097 kb on - strand, within H281DRAFT_05788at 62.097 kb on - strand, within H281DRAFT_05788at 62.097 kb on - strand, within H281DRAFT_05788at 62.097 kb on - strand, within H281DRAFT_05788at 62.125 kb on + strand, within H281DRAFT_05788at 62.125 kb on + strand, within H281DRAFT_05788at 62.125 kb on + strand, within H281DRAFT_05788at 62.125 kb on + strand, within H281DRAFT_05788at 62.126 kb on - strand, within H281DRAFT_05788at 62.209 kb on + strandat 62.209 kb on + strandat 62.267 kb on + strandat 62.268 kb on - strandat 62.280 kb on - strandat 62.367 kb on - strand, within H281DRAFT_05789at 62.561 kb on + strandat 62.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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60,377 + H281DRAFT_05786 0.66 +1.5
60,377 + H281DRAFT_05786 0.66 +0.2
60,383 + H281DRAFT_05786 0.66 +1.6
60,384 - H281DRAFT_05786 0.66 +1.2
60,480 + H281DRAFT_05786 0.72 +1.0
60,481 - H281DRAFT_05786 0.72 +1.3
60,481 - H281DRAFT_05786 0.72 +1.7
60,645 + H281DRAFT_05786 0.81 +0.1
60,646 - H281DRAFT_05786 0.81 +1.2
60,724 - H281DRAFT_05786 0.85 +2.5
60,724 - H281DRAFT_05786 0.85 +1.2
61,058 - -0.5
61,067 + +0.4
61,138 - +0.0
61,169 + +0.0
61,170 - +0.1
61,170 - +0.2
61,170 - +0.5
61,170 - +0.7
61,550 - +1.8
61,737 + +0.7
61,737 + -0.0
61,737 + +1.6
61,737 + -0.1
61,737 + +1.0
61,737 + +0.2
61,738 - -3.0
61,738 - -2.4
61,793 + -2.1
61,793 + -1.0
61,793 + -1.3
61,793 + -2.9
61,793 + -0.8
61,793 + -2.0
61,794 - -2.1
61,851 + -0.8
61,852 - -4.0
61,917 + H281DRAFT_05788 0.23 -0.8
61,917 + H281DRAFT_05788 0.23 -1.3
62,086 + H281DRAFT_05788 0.62 -1.0
62,086 + H281DRAFT_05788 0.62 -0.3
62,086 + H281DRAFT_05788 0.62 -0.4
62,087 - H281DRAFT_05788 0.62 -1.3
62,087 - H281DRAFT_05788 0.62 -0.5
62,088 + H281DRAFT_05788 0.62 -2.8
62,088 + H281DRAFT_05788 0.62 -2.4
62,088 + H281DRAFT_05788 0.62 -1.1
62,089 - H281DRAFT_05788 0.62 -2.3
62,090 + -1.5
62,090 + H281DRAFT_05788 0.63 -1.1
62,090 + H281DRAFT_05788 0.63 -1.9
62,090 + H281DRAFT_05788 0.63 -2.2
62,090 + H281DRAFT_05788 0.63 -0.6
62,090 + H281DRAFT_05788 0.63 -0.5
62,090 + H281DRAFT_05788 0.63 -1.4
62,090 + H281DRAFT_05788 0.63 -1.4
62,090 + H281DRAFT_05788 0.63 -2.5
62,090 + H281DRAFT_05788 0.63 -1.0
62,090 + H281DRAFT_05788 0.63 -1.0
62,091 - H281DRAFT_05788 0.63 -2.9
62,091 - H281DRAFT_05788 0.63 -1.5
62,091 - H281DRAFT_05788 0.63 -3.6
62,091 - H281DRAFT_05788 0.63 -3.0
62,091 - H281DRAFT_05788 0.63 -2.4
62,091 - H281DRAFT_05788 0.63 -0.5
62,091 - H281DRAFT_05788 0.63 -2.1
62,091 - H281DRAFT_05788 0.63 -3.4
62,091 - H281DRAFT_05788 0.63 -4.0
62,091 - H281DRAFT_05788 0.63 -3.0
62,094 + H281DRAFT_05788 0.63 -1.6
62,094 + H281DRAFT_05788 0.63 -1.3
62,094 + H281DRAFT_05788 0.63 -0.5
62,094 + H281DRAFT_05788 0.63 -1.5
62,094 + H281DRAFT_05788 0.63 -0.9
62,094 + H281DRAFT_05788 0.63 -1.3
62,095 - H281DRAFT_05788 0.64 -1.5
62,095 - H281DRAFT_05788 0.64 +0.0
62,096 + H281DRAFT_05788 0.64 -0.6
62,096 + H281DRAFT_05788 0.64 -1.9
62,096 + H281DRAFT_05788 0.64 +0.6
62,096 + H281DRAFT_05788 0.64 -1.9
62,096 + H281DRAFT_05788 0.64 -0.7
62,097 - H281DRAFT_05788 0.64 -3.7
62,097 - H281DRAFT_05788 0.64 -1.1
62,097 - H281DRAFT_05788 0.64 -1.9
62,097 - H281DRAFT_05788 0.64 -2.7
62,125 + H281DRAFT_05788 0.71 -1.0
62,125 + H281DRAFT_05788 0.71 -2.0
62,125 + H281DRAFT_05788 0.71 -1.7
62,125 + H281DRAFT_05788 0.71 -0.9
62,126 - H281DRAFT_05788 0.71 -1.0
62,209 + -0.6
62,209 + -0.4
62,267 + -1.3
62,268 - -3.1
62,280 - -4.4
62,367 - H281DRAFT_05789 0.36 -3.2
62,561 + +0.8
62,561 + +1.3

Or see this region's nucleotide sequence