Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05773

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05772 and H281DRAFT_05773 are separated by 10 nucleotidesH281DRAFT_05773 and H281DRAFT_05774 are separated by 231 nucleotides H281DRAFT_05772: H281DRAFT_05772 - flagellar hook-associated protein 1 FlgK, at 45,513 to 47,486 _05772 H281DRAFT_05773: H281DRAFT_05773 - flagellar hook-associated protein 3 FlgL, at 47,497 to 48,720 _05773 H281DRAFT_05774: H281DRAFT_05774 - flagellar biosynthetic protein FliR, at 48,952 to 49,734 _05774 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 46.524 kb on + strand, within H281DRAFT_05772at 46.602 kb on + strand, within H281DRAFT_05772at 46.629 kb on + strand, within H281DRAFT_05772at 46.629 kb on + strand, within H281DRAFT_05772at 46.631 kb on + strand, within H281DRAFT_05772at 46.631 kb on + strand, within H281DRAFT_05772at 46.632 kb on - strand, within H281DRAFT_05772at 46.632 kb on - strand, within H281DRAFT_05772at 46.897 kb on - strand, within H281DRAFT_05772at 46.897 kb on - strand, within H281DRAFT_05772at 47.001 kb on + strand, within H281DRAFT_05772at 47.002 kb on - strand, within H281DRAFT_05772at 47.002 kb on - strand, within H281DRAFT_05772at 47.262 kb on + strand, within H281DRAFT_05772at 47.416 kb on - strandat 47.416 kb on - strandat 47.575 kb on + strandat 47.681 kb on - strand, within H281DRAFT_05773at 47.897 kb on - strand, within H281DRAFT_05773at 47.897 kb on - strand, within H281DRAFT_05773at 47.897 kb on - strand, within H281DRAFT_05773at 47.912 kb on - strand, within H281DRAFT_05773at 47.932 kb on + strand, within H281DRAFT_05773at 47.933 kb on - strand, within H281DRAFT_05773at 47.933 kb on - strand, within H281DRAFT_05773at 48.167 kb on - strand, within H281DRAFT_05773at 48.167 kb on - strand, within H281DRAFT_05773at 48.196 kb on + strand, within H281DRAFT_05773at 48.196 kb on + strand, within H281DRAFT_05773at 48.197 kb on - strand, within H281DRAFT_05773at 48.197 kb on - strand, within H281DRAFT_05773at 48.568 kb on - strand, within H281DRAFT_05773at 48.634 kb on + strandat 48.635 kb on - strandat 48.635 kb on - strandat 48.693 kb on + strandat 48.694 kb on - strandat 48.694 kb on - strandat 48.739 kb on - strandat 48.739 kb on - strandat 48.827 kb on + strandat 48.831 kb on - strandat 48.855 kb on + strandat 48.856 kb on - strandat 48.918 kb on + strandat 48.954 kb on - strandat 49.057 kb on - strand, within H281DRAFT_05774at 49.349 kb on + strand, within H281DRAFT_05774at 49.350 kb on - strand, within H281DRAFT_05774at 49.718 kb on + strandat 49.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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46,524 + H281DRAFT_05772 0.51 -0.0
46,602 + H281DRAFT_05772 0.55 -1.3
46,629 + H281DRAFT_05772 0.57 -1.5
46,629 + H281DRAFT_05772 0.57 +0.0
46,631 + H281DRAFT_05772 0.57 -1.2
46,631 + H281DRAFT_05772 0.57 -0.2
46,632 - H281DRAFT_05772 0.57 -0.2
46,632 - H281DRAFT_05772 0.57 -0.1
46,897 - H281DRAFT_05772 0.70 +0.7
46,897 - H281DRAFT_05772 0.70 -0.0
47,001 + H281DRAFT_05772 0.75 -0.1
47,002 - H281DRAFT_05772 0.75 -1.1
47,002 - H281DRAFT_05772 0.75 -1.3
47,262 + H281DRAFT_05772 0.89 +1.0
47,416 - -0.5
47,416 - -0.6
47,575 + -0.4
47,681 - H281DRAFT_05773 0.15 -1.8
47,897 - H281DRAFT_05773 0.33 -2.5
47,897 - H281DRAFT_05773 0.33 -0.3
47,897 - H281DRAFT_05773 0.33 +0.5
47,912 - H281DRAFT_05773 0.34 -0.8
47,932 + H281DRAFT_05773 0.36 -0.8
47,933 - H281DRAFT_05773 0.36 -0.1
47,933 - H281DRAFT_05773 0.36 -0.4
48,167 - H281DRAFT_05773 0.55 -0.4
48,167 - H281DRAFT_05773 0.55 +1.8
48,196 + H281DRAFT_05773 0.57 +0.3
48,196 + H281DRAFT_05773 0.57 -1.1
48,197 - H281DRAFT_05773 0.57 -0.9
48,197 - H281DRAFT_05773 0.57 -1.2
48,568 - H281DRAFT_05773 0.88 +0.0
48,634 + +0.9
48,635 - -1.0
48,635 - -0.0
48,693 + +0.5
48,694 - -1.1
48,694 - -1.1
48,739 - -0.0
48,739 - +0.2
48,827 + +0.6
48,831 - -0.3
48,855 + -0.0
48,856 - -1.5
48,918 + -0.6
48,954 - +0.3
49,057 - H281DRAFT_05774 0.13 +1.4
49,349 + H281DRAFT_05774 0.51 +1.4
49,350 - H281DRAFT_05774 0.51 +1.5
49,718 + +2.2
49,719 - +2.0

Or see this region's nucleotide sequence