Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05492 and H281DRAFT_05493 are separated by 12 nucleotides H281DRAFT_05493 and H281DRAFT_05494 are separated by 169 nucleotides H281DRAFT_05494 and H281DRAFT_05495 are separated by 79 nucleotides
H281DRAFT_05492: H281DRAFT_05492 - putative spermidine/putrescine transport system ATP-binding protein, at 71,320 to 72,438
_05492
H281DRAFT_05493: H281DRAFT_05493 - 4-aminobutyrate---pyruvate transaminase, at 72,451 to 73,839
_05493
H281DRAFT_05494: H281DRAFT_05494 - DNA-binding transcriptional regulator, GntR family, at 74,009 to 74,650
_05494
H281DRAFT_05495: H281DRAFT_05495 - putative spermidine/putrescine transport system substrate-binding protein, at 74,730 to 75,770
_05495
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.502 kb on - strand, within H281DRAFT_05492 at 71.706 kb on + strand, within H281DRAFT_05492 at 71.762 kb on + strand, within H281DRAFT_05492 at 71.861 kb on + strand, within H281DRAFT_05492 at 71.861 kb on + strand, within H281DRAFT_05492 at 71.861 kb on + strand, within H281DRAFT_05492 at 71.861 kb on + strand, within H281DRAFT_05492 at 71.862 kb on - strand, within H281DRAFT_05492 at 71.862 kb on - strand, within H281DRAFT_05492 at 71.862 kb on - strand, within H281DRAFT_05492 at 71.862 kb on - strand, within H281DRAFT_05492 at 71.890 kb on + strand, within H281DRAFT_05492 at 71.890 kb on + strand, within H281DRAFT_05492 at 71.907 kb on - strand, within H281DRAFT_05492 at 72.113 kb on - strand, within H281DRAFT_05492 at 72.159 kb on + strand, within H281DRAFT_05492 at 72.159 kb on + strand, within H281DRAFT_05492 at 72.159 kb on + strand, within H281DRAFT_05492 at 72.160 kb on - strand, within H281DRAFT_05492 at 72.160 kb on - strand, within H281DRAFT_05492 at 72.160 kb on - strand, within H281DRAFT_05492 at 72.160 kb on - strand, within H281DRAFT_05492 at 72.160 kb on - strand, within H281DRAFT_05492 at 72.177 kb on - strand, within H281DRAFT_05492 at 72.207 kb on + strand, within H281DRAFT_05492 at 72.523 kb on + strand at 72.682 kb on + strand, within H281DRAFT_05493 at 72.761 kb on + strand, within H281DRAFT_05493 at 72.761 kb on + strand, within H281DRAFT_05493 at 72.762 kb on - strand, within H281DRAFT_05493 at 72.806 kb on + strand, within H281DRAFT_05493 at 72.806 kb on + strand, within H281DRAFT_05493 at 72.807 kb on - strand, within H281DRAFT_05493 at 72.953 kb on + strand, within H281DRAFT_05493 at 72.954 kb on - strand, within H281DRAFT_05493 at 72.954 kb on - strand, within H281DRAFT_05493 at 73.333 kb on - strand, within H281DRAFT_05493 at 73.333 kb on - strand, within H281DRAFT_05493 at 73.437 kb on - strand, within H281DRAFT_05493 at 73.437 kb on - strand, within H281DRAFT_05493 at 73.437 kb on - strand, within H281DRAFT_05493 at 73.448 kb on - strand, within H281DRAFT_05493 at 73.448 kb on - strand, within H281DRAFT_05493 at 73.584 kb on - strand, within H281DRAFT_05493 at 73.584 kb on - strand, within H281DRAFT_05493 at 73.587 kb on - strand, within H281DRAFT_05493 at 73.587 kb on - strand, within H281DRAFT_05493 at 73.587 kb on - strand, within H281DRAFT_05493 at 73.756 kb on + strand at 73.756 kb on + strand at 73.757 kb on - strand at 73.910 kb on + strand at 73.943 kb on - strand at 73.965 kb on - strand at 74.025 kb on - strand at 74.027 kb on - strand at 74.056 kb on + strand at 74.480 kb on + strand at 74.480 kb on + strand, within H281DRAFT_05494
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 71,502 - H281DRAFT_05492 0.16 -0.1 71,706 + H281DRAFT_05492 0.34 +0.1 71,762 + H281DRAFT_05492 0.39 -0.2 71,861 + H281DRAFT_05492 0.48 -0.1 71,861 + H281DRAFT_05492 0.48 -0.1 71,861 + H281DRAFT_05492 0.48 -0.6 71,861 + H281DRAFT_05492 0.48 -0.3 71,862 - H281DRAFT_05492 0.48 +0.2 71,862 - H281DRAFT_05492 0.48 -0.3 71,862 - H281DRAFT_05492 0.48 -0.0 71,862 - H281DRAFT_05492 0.48 -0.6 71,890 + H281DRAFT_05492 0.51 -0.6 71,890 + H281DRAFT_05492 0.51 +0.3 71,907 - H281DRAFT_05492 0.52 -0.0 72,113 - H281DRAFT_05492 0.71 +0.1 72,159 + H281DRAFT_05492 0.75 +0.2 72,159 + H281DRAFT_05492 0.75 +0.2 72,159 + H281DRAFT_05492 0.75 -0.2 72,160 - H281DRAFT_05492 0.75 -0.8 72,160 - H281DRAFT_05492 0.75 -0.5 72,160 - H281DRAFT_05492 0.75 +0.4 72,160 - H281DRAFT_05492 0.75 -0.1 72,160 - H281DRAFT_05492 0.75 -0.4 72,177 - H281DRAFT_05492 0.77 +1.5 72,207 + H281DRAFT_05492 0.79 +1.8 72,523 + +0.0 72,682 + H281DRAFT_05493 0.17 -1.1 72,761 + H281DRAFT_05493 0.22 -0.4 72,761 + H281DRAFT_05493 0.22 -0.3 72,762 - H281DRAFT_05493 0.22 -0.6 72,806 + H281DRAFT_05493 0.26 -1.0 72,806 + H281DRAFT_05493 0.26 -0.5 72,807 - H281DRAFT_05493 0.26 +0.8 72,953 + H281DRAFT_05493 0.36 -0.4 72,954 - H281DRAFT_05493 0.36 +0.3 72,954 - H281DRAFT_05493 0.36 -0.8 73,333 - H281DRAFT_05493 0.63 -0.1 73,333 - H281DRAFT_05493 0.63 +0.6 73,437 - H281DRAFT_05493 0.71 -0.4 73,437 - H281DRAFT_05493 0.71 -0.5 73,437 - H281DRAFT_05493 0.71 +0.7 73,448 - H281DRAFT_05493 0.72 +0.3 73,448 - H281DRAFT_05493 0.72 -0.3 73,584 - H281DRAFT_05493 0.82 +1.3 73,584 - H281DRAFT_05493 0.82 -0.4 73,587 - H281DRAFT_05493 0.82 -0.2 73,587 - H281DRAFT_05493 0.82 +0.4 73,587 - H281DRAFT_05493 0.82 -0.3 73,756 + +0.3 73,756 + +0.3 73,757 - -0.2 73,910 + +0.7 73,943 - -0.6 73,965 - +0.4 74,025 - -0.1 74,027 - -1.3 74,056 + +1.3 74,480 + -0.7 74,480 + H281DRAFT_05494 0.73 -2.6
Or see this region's nucleotide sequence