Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05472

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05471 and H281DRAFT_05472 are separated by 13 nucleotidesH281DRAFT_05472 and H281DRAFT_05473 are separated by 24 nucleotidesH281DRAFT_05473 and H281DRAFT_05474 overlap by 4 nucleotides H281DRAFT_05471: H281DRAFT_05471 - pyruvate dehydrogenase (quinone), at 51,341 to 53,137 _05471 H281DRAFT_05472: H281DRAFT_05472 - L-alanine-DL-glutamate epimerase, at 53,151 to 54,257 _05472 H281DRAFT_05473: H281DRAFT_05473 - hypothetical protein, at 54,282 to 55,199 _05473 H281DRAFT_05474: H281DRAFT_05474 - Gluconate 2-dehydrogenase subunit 3, at 55,196 to 55,843 _05474 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1at 52.718 kb on + strand, within H281DRAFT_05471at 52.896 kb on - strand, within H281DRAFT_05471at 52.896 kb on - strand, within H281DRAFT_05471at 52.896 kb on - strand, within H281DRAFT_05471at 52.896 kb on - strand, within H281DRAFT_05471at 53.135 kb on + strandat 53.241 kb on + strandat 53.242 kb on - strandat 53.242 kb on - strandat 53.313 kb on + strand, within H281DRAFT_05472at 53.314 kb on - strand, within H281DRAFT_05472at 53.314 kb on - strand, within H281DRAFT_05472at 54.030 kb on + strand, within H281DRAFT_05472at 54.130 kb on + strand, within H281DRAFT_05472at 54.130 kb on + strand, within H281DRAFT_05472at 54.130 kb on + strand, within H281DRAFT_05472at 54.504 kb on + strand, within H281DRAFT_05473at 54.505 kb on - strand, within H281DRAFT_05473at 54.505 kb on - strand, within H281DRAFT_05473at 54.648 kb on + strand, within H281DRAFT_05473at 54.649 kb on - strand, within H281DRAFT_05473at 54.649 kb on - strand, within H281DRAFT_05473at 54.649 kb on - strand, within H281DRAFT_05473at 54.649 kb on - strand, within H281DRAFT_05473at 54.912 kb on + strand, within H281DRAFT_05473at 54.913 kb on - strand, within H281DRAFT_05473

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
52,718 + H281DRAFT_05471 0.77 +0.2
52,896 - H281DRAFT_05471 0.87 -0.5
52,896 - H281DRAFT_05471 0.87 +0.1
52,896 - H281DRAFT_05471 0.87 +0.4
52,896 - H281DRAFT_05471 0.87 +0.4
53,135 + -0.3
53,241 + +0.5
53,242 - -0.8
53,242 - +0.8
53,313 + H281DRAFT_05472 0.15 +0.5
53,314 - H281DRAFT_05472 0.15 +1.1
53,314 - H281DRAFT_05472 0.15 +0.5
54,030 + H281DRAFT_05472 0.79 +0.2
54,130 + H281DRAFT_05472 0.88 -1.8
54,130 + H281DRAFT_05472 0.88 +0.3
54,130 + H281DRAFT_05472 0.88 -1.3
54,504 + H281DRAFT_05473 0.24 +0.1
54,505 - H281DRAFT_05473 0.24 -0.4
54,505 - H281DRAFT_05473 0.24 +0.5
54,648 + H281DRAFT_05473 0.40 +0.6
54,649 - H281DRAFT_05473 0.40 +0.3
54,649 - H281DRAFT_05473 0.40 -0.7
54,649 - H281DRAFT_05473 0.40 +0.4
54,649 - H281DRAFT_05473 0.40 +0.5
54,912 + H281DRAFT_05473 0.69 -0.1
54,913 - H281DRAFT_05473 0.69 -0.1

Or see this region's nucleotide sequence