Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05157 and H281DRAFT_05158 are separated by 192 nucleotides H281DRAFT_05158 and H281DRAFT_05159 overlap by 4 nucleotides H281DRAFT_05159 and H281DRAFT_05160 are separated by 141 nucleotides
H281DRAFT_05157: H281DRAFT_05157 - allantoin racemase, at 111,001 to 111,828
_05157
H281DRAFT_05158: H281DRAFT_05158 - putative urate catabolism protein, at 112,021 to 112,971
_05158
H281DRAFT_05159: H281DRAFT_05159 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 112,968 to 113,489
_05159
H281DRAFT_05160: H281DRAFT_05160 - allantoicase, at 113,631 to 114,644
_05160
Position (kb) 112
113 Strain fitness (log2 ratio) -2
-1
0
1
2 at 111.647 kb on + strand, within H281DRAFT_05157 at 111.816 kb on - strand at 111.996 kb on - strand at 112.039 kb on + strand at 112.040 kb on - strand at 112.040 kb on - strand at 112.271 kb on + strand, within H281DRAFT_05158 at 112.456 kb on - strand, within H281DRAFT_05158 at 112.586 kb on - strand, within H281DRAFT_05158 at 112.589 kb on - strand, within H281DRAFT_05158 at 112.736 kb on - strand at 112.762 kb on + strand, within H281DRAFT_05158 at 112.867 kb on - strand, within H281DRAFT_05158 at 113.129 kb on + strand, within H281DRAFT_05159 at 113.129 kb on + strand at 113.406 kb on - strand, within H281DRAFT_05159 at 113.423 kb on - strand, within H281DRAFT_05159 at 113.562 kb on - strand at 113.796 kb on + strand, within H281DRAFT_05160
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 111,647 + H281DRAFT_05157 0.78 +0.2 111,816 - +0.2 111,996 - -1.8 112,039 + -0.1 112,040 - -0.2 112,040 - -1.0 112,271 + H281DRAFT_05158 0.26 -0.5 112,456 - H281DRAFT_05158 0.46 -1.3 112,586 - H281DRAFT_05158 0.59 -1.1 112,589 - H281DRAFT_05158 0.60 -1.3 112,736 - +2.1 112,762 + H281DRAFT_05158 0.78 -0.9 112,867 - H281DRAFT_05158 0.89 -0.8 113,129 + H281DRAFT_05159 0.31 -0.7 113,129 + -1.9 113,406 - H281DRAFT_05159 0.84 -1.1 113,423 - H281DRAFT_05159 0.87 -0.7 113,562 - -1.2 113,796 + H281DRAFT_05160 0.16 +0.1
Or see this region's nucleotide sequence