Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04940 and H281DRAFT_04941 overlap by 8 nucleotides H281DRAFT_04941 and H281DRAFT_04942 are separated by 10 nucleotides H281DRAFT_04942 and H281DRAFT_04943 are separated by 44 nucleotides
H281DRAFT_04940: H281DRAFT_04940 - acetylornithine deacetylase, at 124,089 to 125,252
_04940
H281DRAFT_04941: H281DRAFT_04941 - Uncharacterized conserved protein, Ntn-hydrolase superfamily, at 125,245 to 125,922
_04941
H281DRAFT_04942: H281DRAFT_04942 - Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family, at 125,933 to 126,370
_04942
H281DRAFT_04943: H281DRAFT_04943 - putative flavoprotein involved in K+ transport, at 126,415 to 127,779
_04943
Position (kb) 125
126 Strain fitness (log2 ratio) -1
0
1 at 124.299 kb on + strand, within H281DRAFT_04940 at 124.299 kb on + strand, within H281DRAFT_04940 at 124.299 kb on + strand, within H281DRAFT_04940 at 124.300 kb on - strand, within H281DRAFT_04940 at 124.300 kb on - strand, within H281DRAFT_04940 at 124.666 kb on + strand, within H281DRAFT_04940 at 124.666 kb on + strand, within H281DRAFT_04940 at 124.852 kb on + strand, within H281DRAFT_04940 at 125.568 kb on + strand, within H281DRAFT_04941 at 125.610 kb on - strand, within H281DRAFT_04941 at 126.045 kb on - strand, within H281DRAFT_04942 at 126.075 kb on + strand, within H281DRAFT_04942 at 126.075 kb on + strand, within H281DRAFT_04942 at 126.108 kb on + strand, within H281DRAFT_04942 at 126.258 kb on + strand, within H281DRAFT_04942 at 126.358 kb on + strand at 126.383 kb on + strand at 126.383 kb on + strand at 126.383 kb on + strand at 126.607 kb on - strand, within H281DRAFT_04943 at 126.694 kb on - strand, within H281DRAFT_04943 at 126.914 kb on + strand, within H281DRAFT_04943 at 126.914 kb on + strand, within H281DRAFT_04943
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 124,299 + H281DRAFT_04940 0.18 +0.3 124,299 + H281DRAFT_04940 0.18 +0.9 124,299 + H281DRAFT_04940 0.18 +0.3 124,300 - H281DRAFT_04940 0.18 +1.0 124,300 - H281DRAFT_04940 0.18 -0.1 124,666 + H281DRAFT_04940 0.50 -0.0 124,666 + H281DRAFT_04940 0.50 +0.2 124,852 + H281DRAFT_04940 0.66 +0.5 125,568 + H281DRAFT_04941 0.48 +0.3 125,610 - H281DRAFT_04941 0.54 +0.2 126,045 - H281DRAFT_04942 0.26 +0.3 126,075 + H281DRAFT_04942 0.32 -0.1 126,075 + H281DRAFT_04942 0.32 -0.0 126,108 + H281DRAFT_04942 0.40 -0.4 126,258 + H281DRAFT_04942 0.74 -1.6 126,358 + -0.1 126,383 + +1.1 126,383 + +0.2 126,383 + +0.1 126,607 - H281DRAFT_04943 0.14 -0.4 126,694 - H281DRAFT_04943 0.20 +0.1 126,914 + H281DRAFT_04943 0.37 +0.3 126,914 + H281DRAFT_04943 0.37 +0.1
Or see this region's nucleotide sequence