Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04387

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04385 and H281DRAFT_04386 are separated by 18 nucleotidesH281DRAFT_04386 and H281DRAFT_04387 are separated by 32 nucleotidesH281DRAFT_04387 and H281DRAFT_04388 are separated by 507 nucleotides H281DRAFT_04385: H281DRAFT_04385 - putative membrane protein, at 98,753 to 99,649 _04385 H281DRAFT_04386: H281DRAFT_04386 - hypothetical protein, at 99,668 to 100,117 _04386 H281DRAFT_04387: H281DRAFT_04387 - protein SCO1/2, at 100,150 to 100,707 _04387 H281DRAFT_04388: H281DRAFT_04388 - trehalose 6-phosphatase (EC 3.1.3.12), at 101,215 to 101,964 _04388 Position (kb) 100 101Strain fitness (log2 ratio) -3 -2 -1 0 1at 99.237 kb on + strand, within H281DRAFT_04385at 99.237 kb on + strand, within H281DRAFT_04385at 99.237 kb on + strand, within H281DRAFT_04385at 99.303 kb on - strand, within H281DRAFT_04385at 99.468 kb on + strand, within H281DRAFT_04385at 99.495 kb on + strand, within H281DRAFT_04385at 99.495 kb on + strand, within H281DRAFT_04385at 99.496 kb on - strand, within H281DRAFT_04385at 99.496 kb on - strand, within H281DRAFT_04385at 99.496 kb on - strand, within H281DRAFT_04385at 99.496 kb on - strand, within H281DRAFT_04385at 99.669 kb on + strandat 99.669 kb on + strandat 99.669 kb on + strandat 99.670 kb on - strandat 99.670 kb on - strandat 99.670 kb on - strandat 99.670 kb on - strandat 99.746 kb on + strand, within H281DRAFT_04386at 99.746 kb on + strand, within H281DRAFT_04386at 99.746 kb on + strandat 99.747 kb on - strand, within H281DRAFT_04386at 99.975 kb on + strand, within H281DRAFT_04386at 100.111 kb on + strandat 100.111 kb on + strandat 100.112 kb on - strandat 100.253 kb on + strand, within H281DRAFT_04387at 100.253 kb on + strand, within H281DRAFT_04387at 100.254 kb on - strand, within H281DRAFT_04387at 100.254 kb on - strand, within H281DRAFT_04387at 100.266 kb on + strand, within H281DRAFT_04387at 100.266 kb on + strandat 100.266 kb on + strand, within H281DRAFT_04387at 100.267 kb on - strand, within H281DRAFT_04387at 100.267 kb on - strand, within H281DRAFT_04387at 100.267 kb on - strand, within H281DRAFT_04387at 100.280 kb on + strand, within H281DRAFT_04387at 100.280 kb on + strand, within H281DRAFT_04387at 100.404 kb on - strand, within H281DRAFT_04387at 100.556 kb on + strand, within H281DRAFT_04387at 100.825 kb on + strandat 101.681 kb on - strand, within H281DRAFT_04388at 101.681 kb on - strand, within H281DRAFT_04388

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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99,237 + H281DRAFT_04385 0.54 +0.0
99,237 + H281DRAFT_04385 0.54 -0.3
99,237 + H281DRAFT_04385 0.54 -0.5
99,303 - H281DRAFT_04385 0.61 -0.3
99,468 + H281DRAFT_04385 0.80 -1.0
99,495 + H281DRAFT_04385 0.83 -1.0
99,495 + H281DRAFT_04385 0.83 -0.1
99,496 - H281DRAFT_04385 0.83 +0.2
99,496 - H281DRAFT_04385 0.83 +0.7
99,496 - H281DRAFT_04385 0.83 +0.3
99,496 - H281DRAFT_04385 0.83 +0.0
99,669 + +0.0
99,669 + +0.1
99,669 + -0.7
99,670 - +0.2
99,670 - -0.3
99,670 - -0.8
99,670 - +0.5
99,746 + H281DRAFT_04386 0.17 -1.3
99,746 + H281DRAFT_04386 0.17 -2.3
99,746 + -0.9
99,747 - H281DRAFT_04386 0.18 -2.8
99,975 + H281DRAFT_04386 0.68 -0.6
100,111 + -0.7
100,111 + -1.4
100,112 - -3.0
100,253 + H281DRAFT_04387 0.18 -0.7
100,253 + H281DRAFT_04387 0.18 -2.5
100,254 - H281DRAFT_04387 0.19 -0.0
100,254 - H281DRAFT_04387 0.19 +0.5
100,266 + H281DRAFT_04387 0.21 -1.8
100,266 + -1.2
100,266 + H281DRAFT_04387 0.21 -1.2
100,267 - H281DRAFT_04387 0.21 -0.4
100,267 - H281DRAFT_04387 0.21 -1.3
100,267 - H281DRAFT_04387 0.21 -0.6
100,280 + H281DRAFT_04387 0.23 -1.8
100,280 + H281DRAFT_04387 0.23 -0.5
100,404 - H281DRAFT_04387 0.46 -1.6
100,556 + H281DRAFT_04387 0.73 -0.4
100,825 + -0.6
101,681 - H281DRAFT_04388 0.62 -1.5
101,681 - H281DRAFT_04388 0.62 -0.5

Or see this region's nucleotide sequence