Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04032

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04031 and H281DRAFT_04032 are separated by 77 nucleotidesH281DRAFT_04032 and H281DRAFT_04033 are separated by 197 nucleotidesH281DRAFT_04033 and H281DRAFT_04034 are separated by 106 nucleotides H281DRAFT_04031: H281DRAFT_04031 - Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains, at 133,345 to 134,286 _04031 H281DRAFT_04032: H281DRAFT_04032 - conserved hypothetical protein, at 134,364 to 134,684 _04032 H281DRAFT_04033: H281DRAFT_04033 - YggT family protein, at 134,882 to 135,445 _04033 H281DRAFT_04034: H281DRAFT_04034 - tRNA_Gly_CCC, at 135,552 to 135,625 _04034 Position (kb) 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 133.594 kb on - strand, within H281DRAFT_04031at 133.594 kb on - strand, within H281DRAFT_04031at 133.633 kb on + strand, within H281DRAFT_04031at 133.732 kb on + strand, within H281DRAFT_04031at 133.885 kb on + strand, within H281DRAFT_04031at 133.885 kb on + strand, within H281DRAFT_04031at 133.886 kb on - strand, within H281DRAFT_04031at 133.886 kb on - strand, within H281DRAFT_04031at 133.886 kb on - strand, within H281DRAFT_04031at 133.903 kb on + strand, within H281DRAFT_04031at 133.903 kb on + strand, within H281DRAFT_04031at 133.904 kb on - strand, within H281DRAFT_04031at 133.904 kb on - strand, within H281DRAFT_04031at 134.143 kb on + strand, within H281DRAFT_04031at 134.143 kb on + strand, within H281DRAFT_04031at 134.143 kb on + strand, within H281DRAFT_04031at 134.284 kb on + strandat 134.285 kb on - strandat 134.294 kb on + strandat 134.294 kb on + strandat 134.294 kb on + strandat 134.294 kb on + strandat 134.295 kb on - strandat 134.421 kb on + strand, within H281DRAFT_04032at 134.422 kb on - strand, within H281DRAFT_04032at 134.422 kb on - strand, within H281DRAFT_04032at 134.424 kb on + strand, within H281DRAFT_04032at 134.425 kb on - strand, within H281DRAFT_04032at 134.425 kb on - strand, within H281DRAFT_04032at 134.532 kb on + strand, within H281DRAFT_04032at 134.532 kb on + strand, within H281DRAFT_04032at 134.533 kb on - strand, within H281DRAFT_04032at 134.533 kb on - strand, within H281DRAFT_04032at 134.533 kb on - strand, within H281DRAFT_04032at 134.533 kb on - strandat 134.578 kb on - strand, within H281DRAFT_04032at 134.628 kb on + strand, within H281DRAFT_04032at 134.629 kb on - strand, within H281DRAFT_04032at 134.629 kb on - strand, within H281DRAFT_04032at 134.629 kb on - strand, within H281DRAFT_04032at 134.629 kb on - strand, within H281DRAFT_04032at 134.800 kb on - strandat 134.800 kb on - strandat 134.870 kb on + strandat 134.870 kb on + strandat 134.870 kb on + strandat 135.009 kb on + strand, within H281DRAFT_04033at 135.009 kb on + strand, within H281DRAFT_04033at 135.009 kb on + strand, within H281DRAFT_04033at 135.009 kb on + strand, within H281DRAFT_04033at 135.010 kb on - strand, within H281DRAFT_04033at 135.431 kb on + strandat 135.431 kb on + strandat 135.431 kb on + strandat 135.432 kb on - strandat 135.490 kb on + strandat 135.542 kb on - strandat 135.562 kb on + strand, within H281DRAFT_04034at 135.562 kb on + strand, within H281DRAFT_04034at 135.562 kb on + strand, within H281DRAFT_04034at 135.565 kb on - strand, within H281DRAFT_04034at 135.565 kb on - strand, within H281DRAFT_04034at 135.570 kb on + strand, within H281DRAFT_04034at 135.571 kb on - strand, within H281DRAFT_04034at 135.573 kb on + strand, within H281DRAFT_04034at 135.573 kb on + strand, within H281DRAFT_04034at 135.573 kb on + strand, within H281DRAFT_04034at 135.574 kb on - strand, within H281DRAFT_04034at 135.579 kb on - strand, within H281DRAFT_04034at 135.591 kb on + strand, within H281DRAFT_04034at 135.628 kb on + strandat 135.628 kb on + strandat 135.678 kb on + strandat 135.678 kb on + strandat 135.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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133,594 - H281DRAFT_04031 0.26 -0.1
133,594 - H281DRAFT_04031 0.26 -0.9
133,633 + H281DRAFT_04031 0.31 +0.6
133,732 + H281DRAFT_04031 0.41 -1.3
133,885 + H281DRAFT_04031 0.57 +0.7
133,885 + H281DRAFT_04031 0.57 -0.5
133,886 - H281DRAFT_04031 0.57 +0.3
133,886 - H281DRAFT_04031 0.57 +0.3
133,886 - H281DRAFT_04031 0.57 +0.2
133,903 + H281DRAFT_04031 0.59 -0.0
133,903 + H281DRAFT_04031 0.59 -0.0
133,904 - H281DRAFT_04031 0.59 +1.4
133,904 - H281DRAFT_04031 0.59 +0.1
134,143 + H281DRAFT_04031 0.85 -0.1
134,143 + H281DRAFT_04031 0.85 -0.4
134,143 + H281DRAFT_04031 0.85 +0.8
134,284 + -0.2
134,285 - -0.5
134,294 + +0.4
134,294 + +0.4
134,294 + +0.2
134,294 + +0.1
134,295 - -0.2
134,421 + H281DRAFT_04032 0.18 +0.2
134,422 - H281DRAFT_04032 0.18 +0.4
134,422 - H281DRAFT_04032 0.18 -1.4
134,424 + H281DRAFT_04032 0.19 -0.9
134,425 - H281DRAFT_04032 0.19 -0.6
134,425 - H281DRAFT_04032 0.19 +0.8
134,532 + H281DRAFT_04032 0.52 -0.3
134,532 + H281DRAFT_04032 0.52 -0.7
134,533 - H281DRAFT_04032 0.53 +0.2
134,533 - H281DRAFT_04032 0.53 -1.1
134,533 - H281DRAFT_04032 0.53 -0.6
134,533 - +0.2
134,578 - H281DRAFT_04032 0.67 -1.1
134,628 + H281DRAFT_04032 0.82 -0.2
134,629 - H281DRAFT_04032 0.83 +1.8
134,629 - H281DRAFT_04032 0.83 +0.6
134,629 - H281DRAFT_04032 0.83 +0.1
134,629 - H281DRAFT_04032 0.83 -0.3
134,800 - -0.2
134,800 - +0.2
134,870 + -0.5
134,870 + -0.7
134,870 + +0.6
135,009 + H281DRAFT_04033 0.23 +0.2
135,009 + H281DRAFT_04033 0.23 -1.2
135,009 + H281DRAFT_04033 0.23 -0.6
135,009 + H281DRAFT_04033 0.23 -1.1
135,010 - H281DRAFT_04033 0.23 -2.3
135,431 + -0.9
135,431 + +0.2
135,431 + -1.3
135,432 - -0.8
135,490 + -0.5
135,542 - +0.1
135,562 + H281DRAFT_04034 0.14 -0.4
135,562 + H281DRAFT_04034 0.14 +0.2
135,562 + H281DRAFT_04034 0.14 -1.3
135,565 - H281DRAFT_04034 0.18 +0.2
135,565 - H281DRAFT_04034 0.18 -0.1
135,570 + H281DRAFT_04034 0.24 -0.2
135,571 - H281DRAFT_04034 0.26 +0.5
135,573 + H281DRAFT_04034 0.28 +0.4
135,573 + H281DRAFT_04034 0.28 +0.3
135,573 + H281DRAFT_04034 0.28 -0.5
135,574 - H281DRAFT_04034 0.30 -1.0
135,579 - H281DRAFT_04034 0.36 +1.1
135,591 + H281DRAFT_04034 0.53 -0.0
135,628 + -0.4
135,628 + -0.6
135,678 + +0.4
135,678 + +0.8
135,679 - +1.1

Or see this region's nucleotide sequence