Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02706

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02705 and H281DRAFT_02706 are separated by 63 nucleotidesH281DRAFT_02706 and H281DRAFT_02707 overlap by 4 nucleotides H281DRAFT_02705: H281DRAFT_02705 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 288,553 to 289,650 _02705 H281DRAFT_02706: H281DRAFT_02706 - L-fuculose-phosphate aldolase, at 289,714 to 290,385 _02706 H281DRAFT_02707: H281DRAFT_02707 - methylthioribose-1-phosphate isomerase (EC 5.3.1.23), at 290,382 to 291,461 _02707 Position (kb) 289 290 291Strain fitness (log2 ratio) -1 0 1at 288.922 kb on - strand, within H281DRAFT_02705at 289.716 kb on - strandat 289.894 kb on + strand, within H281DRAFT_02706at 289.895 kb on - strand, within H281DRAFT_02706at 290.028 kb on - strand, within H281DRAFT_02706at 290.089 kb on - strand, within H281DRAFT_02706at 290.642 kb on - strand, within H281DRAFT_02707at 291.262 kb on - strand, within H281DRAFT_02707at 291.262 kb on - strand, within H281DRAFT_02707at 291.262 kb on - strand, within H281DRAFT_02707

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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288,922 - H281DRAFT_02705 0.34 -0.1
289,716 - +0.4
289,894 + H281DRAFT_02706 0.27 +0.5
289,895 - H281DRAFT_02706 0.27 +1.0
290,028 - H281DRAFT_02706 0.47 +0.5
290,089 - H281DRAFT_02706 0.56 +0.3
290,642 - H281DRAFT_02707 0.24 -0.7
291,262 - H281DRAFT_02707 0.81 -0.0
291,262 - H281DRAFT_02707 0.81 -0.6
291,262 - H281DRAFT_02707 0.81 -0.3

Or see this region's nucleotide sequence