Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01756 and H281DRAFT_01757 overlap by 16 nucleotides H281DRAFT_01757 and H281DRAFT_01758 are separated by 35 nucleotides H281DRAFT_01758 and H281DRAFT_01759 are separated by 1 nucleotides H281DRAFT_01759 and H281DRAFT_01760 are separated by 347 nucleotides H281DRAFT_01760 and H281DRAFT_01761 are separated by 89 nucleotides
H281DRAFT_01756: H281DRAFT_01756 - Anti-sigma regulatory factor (Ser/Thr protein kinase), at 652,826 to 653,815
_01756
H281DRAFT_01757: H281DRAFT_01757 - serine/threonine-protein kinase RsbT, at 653,800 to 654,162
_01757
H281DRAFT_01758: H281DRAFT_01758 - rsbT antagonist protein RsbS, at 654,198 to 654,581
_01758
H281DRAFT_01759: H281DRAFT_01759 - rsbT co-antagonist protein RsbR, at 654,583 to 655,452
_01759
H281DRAFT_01760: H281DRAFT_01760 - conserved domain-containing protein, at 655,800 to 656,276
_01760
H281DRAFT_01761: H281DRAFT_01761 - conserved domain-containing protein, at 656,366 to 657,238
_01761
Position (kb) 654
655
656 Strain fitness (log2 ratio) -2
-1
0
1 at 653.665 kb on - strand, within H281DRAFT_01756 at 654.264 kb on + strand, within H281DRAFT_01758 at 654.265 kb on - strand, within H281DRAFT_01758 at 654.265 kb on - strand, within H281DRAFT_01758 at 654.317 kb on + strand, within H281DRAFT_01758 at 654.318 kb on - strand, within H281DRAFT_01758 at 654.320 kb on + strand, within H281DRAFT_01758 at 654.321 kb on - strand, within H281DRAFT_01758 at 654.324 kb on + strand, within H281DRAFT_01758 at 654.325 kb on - strand, within H281DRAFT_01758 at 654.398 kb on + strand, within H281DRAFT_01758 at 654.464 kb on + strand, within H281DRAFT_01758 at 654.465 kb on - strand, within H281DRAFT_01758 at 654.972 kb on + strand, within H281DRAFT_01759 at 655.032 kb on - strand, within H281DRAFT_01759 at 655.335 kb on + strand, within H281DRAFT_01759 at 655.335 kb on + strand, within H281DRAFT_01759 at 655.336 kb on - strand, within H281DRAFT_01759 at 655.466 kb on - strand at 655.495 kb on + strand at 655.496 kb on - strand at 655.537 kb on - strand at 655.537 kb on - strand at 655.537 kb on - strand at 655.537 kb on - strand at 655.581 kb on - strand at 655.581 kb on - strand at 655.716 kb on + strand at 655.717 kb on - strand at 656.388 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 653,665 - H281DRAFT_01756 0.85 +0.2 654,264 + H281DRAFT_01758 0.17 -1.0 654,265 - H281DRAFT_01758 0.17 -1.1 654,265 - H281DRAFT_01758 0.17 +0.4 654,317 + H281DRAFT_01758 0.31 -0.3 654,318 - H281DRAFT_01758 0.31 +0.6 654,320 + H281DRAFT_01758 0.32 -0.8 654,321 - H281DRAFT_01758 0.32 +0.6 654,324 + H281DRAFT_01758 0.33 +0.1 654,325 - H281DRAFT_01758 0.33 -0.7 654,398 + H281DRAFT_01758 0.52 +0.1 654,464 + H281DRAFT_01758 0.69 -0.3 654,465 - H281DRAFT_01758 0.70 +0.2 654,972 + H281DRAFT_01759 0.45 -0.2 655,032 - H281DRAFT_01759 0.52 -0.4 655,335 + H281DRAFT_01759 0.86 -0.5 655,335 + H281DRAFT_01759 0.86 -0.3 655,336 - H281DRAFT_01759 0.87 -0.3 655,466 - +1.0 655,495 + +0.5 655,496 - -0.8 655,537 - -0.4 655,537 - -0.2 655,537 - +0.7 655,537 - -2.3 655,581 - -0.1 655,581 - -1.7 655,716 + -0.5 655,717 - +0.3 656,388 + -0.4
Or see this region's nucleotide sequence