Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01321 and H281DRAFT_01322 overlap by 4 nucleotides H281DRAFT_01322 and H281DRAFT_01323 are separated by 13 nucleotides
H281DRAFT_01321: H281DRAFT_01321 - probable H4MPT-linked C1 transfer pathway protein, at 161,388 to 162,512
_01321
H281DRAFT_01322: H281DRAFT_01322 - Predicted ATP-dependent carboligase, ATP-grasp superfamily, at 162,509 to 163,642
_01322
H281DRAFT_01323: H281DRAFT_01323 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, at 163,656 to 164,402
_01323
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1 at 161.819 kb on - strand, within H281DRAFT_01321 at 162.184 kb on + strand, within H281DRAFT_01321 at 162.724 kb on - strand, within H281DRAFT_01322 at 163.818 kb on + strand, within H281DRAFT_01323 at 163.819 kb on - strand, within H281DRAFT_01323 at 163.819 kb on - strand, within H281DRAFT_01323 at 164.084 kb on - strand, within H281DRAFT_01323 at 164.208 kb on + strand, within H281DRAFT_01323 at 164.400 kb on + strand at 164.401 kb on - strand at 164.478 kb on - strand at 164.626 kb on + strand at 164.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 161,819 - H281DRAFT_01321 0.38 -2.2 162,184 + H281DRAFT_01321 0.71 -0.7 162,724 - H281DRAFT_01322 0.19 +0.2 163,818 + H281DRAFT_01323 0.22 -1.0 163,819 - H281DRAFT_01323 0.22 -0.1 163,819 - H281DRAFT_01323 0.22 -1.3 164,084 - H281DRAFT_01323 0.57 -0.7 164,208 + H281DRAFT_01323 0.74 +0.1 164,400 + -1.3 164,401 - -0.2 164,478 - +0.2 164,626 + -0.8 164,627 - -0.1
Or see this region's nucleotide sequence