Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01218 and H281DRAFT_01219 are separated by 66 nucleotides H281DRAFT_01219 and H281DRAFT_01220 are separated by 151 nucleotides
H281DRAFT_01218: H281DRAFT_01218 - response regulator receiver and ANTAR domain protein, at 56,072 to 56,647
_01218
H281DRAFT_01219: H281DRAFT_01219 - nitrate/nitrite transport system substrate-binding protein, at 56,714 to 57,805
_01219
H281DRAFT_01220: H281DRAFT_01220 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 57,957 to 58,964
_01220
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1
2
3 at 56.002 kb on + strand at 56.003 kb on - strand at 56.003 kb on - strand at 56.028 kb on - strand at 56.066 kb on + strand at 56.067 kb on - strand at 56.121 kb on + strand at 56.122 kb on - strand at 56.883 kb on - strand, within H281DRAFT_01219 at 56.883 kb on - strand, within H281DRAFT_01219 at 56.895 kb on - strand, within H281DRAFT_01219 at 56.949 kb on + strand, within H281DRAFT_01219 at 56.949 kb on + strand, within H281DRAFT_01219 at 56.950 kb on - strand, within H281DRAFT_01219 at 56.950 kb on - strand, within H281DRAFT_01219 at 57.037 kb on + strand, within H281DRAFT_01219 at 57.083 kb on - strand, within H281DRAFT_01219 at 57.102 kb on - strand, within H281DRAFT_01219 at 57.105 kb on - strand, within H281DRAFT_01219 at 57.273 kb on - strand, within H281DRAFT_01219 at 57.275 kb on - strand, within H281DRAFT_01219 at 57.451 kb on + strand, within H281DRAFT_01219 at 57.633 kb on - strand, within H281DRAFT_01219 at 57.803 kb on + strand at 57.910 kb on + strand at 57.978 kb on - strand at 58.258 kb on + strand, within H281DRAFT_01220 at 58.318 kb on + strand, within H281DRAFT_01220 at 58.723 kb on + strand, within H281DRAFT_01220 at 58.724 kb on - strand, within H281DRAFT_01220 at 58.762 kb on - strand, within H281DRAFT_01220
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 56,002 + +0.0 56,003 - +0.9 56,003 - -0.3 56,028 - -1.2 56,066 + +0.0 56,067 - -0.7 56,121 + +0.0 56,122 - -0.7 56,883 - H281DRAFT_01219 0.15 -0.1 56,883 - H281DRAFT_01219 0.15 -0.0 56,895 - H281DRAFT_01219 0.17 +0.2 56,949 + H281DRAFT_01219 0.22 +0.4 56,949 + H281DRAFT_01219 0.22 -0.6 56,950 - H281DRAFT_01219 0.22 +0.2 56,950 - H281DRAFT_01219 0.22 +3.7 57,037 + H281DRAFT_01219 0.30 -0.4 57,083 - H281DRAFT_01219 0.34 -1.6 57,102 - H281DRAFT_01219 0.36 +0.1 57,105 - H281DRAFT_01219 0.36 -0.7 57,273 - H281DRAFT_01219 0.51 -0.5 57,275 - H281DRAFT_01219 0.51 -0.2 57,451 + H281DRAFT_01219 0.67 -0.7 57,633 - H281DRAFT_01219 0.84 +0.1 57,803 + +0.3 57,910 + +0.5 57,978 - -1.1 58,258 + H281DRAFT_01220 0.30 +0.0 58,318 + H281DRAFT_01220 0.36 +0.4 58,723 + H281DRAFT_01220 0.76 +0.8 58,724 - H281DRAFT_01220 0.76 +0.0 58,762 - H281DRAFT_01220 0.80 -0.6
Or see this region's nucleotide sequence