Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00888 and H281DRAFT_00889 are separated by 217 nucleotides H281DRAFT_00889 and H281DRAFT_00890 are separated by 78 nucleotides H281DRAFT_00890 and H281DRAFT_00891 are separated by 300 nucleotides
H281DRAFT_00888: H281DRAFT_00888 - phytoene synthase, at 984,920 to 985,756
_00888
H281DRAFT_00889: H281DRAFT_00889 - tRNA_Leu_TAG, at 985,974 to 986,060
_00889
H281DRAFT_00890: H281DRAFT_00890 - hypothetical protein, at 986,139 to 986,426
_00890
H281DRAFT_00891: H281DRAFT_00891 - hypothetical protein, at 986,727 to 986,987
_00891
Position (kb) 986
987 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 985.222 kb on - strand, within H281DRAFT_00888 at 985.222 kb on - strand, within H281DRAFT_00888 at 985.222 kb on - strand, within H281DRAFT_00888 at 985.392 kb on + strand, within H281DRAFT_00888 at 985.392 kb on + strand, within H281DRAFT_00888 at 985.393 kb on - strand, within H281DRAFT_00888 at 985.740 kb on + strand at 985.835 kb on + strand at 986.069 kb on + strand at 986.493 kb on + strand at 986.494 kb on - strand at 986.495 kb on + strand at 986.537 kb on - strand at 986.565 kb on + strand at 986.595 kb on + strand at 986.599 kb on + strand at 986.599 kb on + strand at 986.599 kb on + strand at 986.599 kb on + strand at 986.610 kb on - strand at 986.610 kb on - strand at 986.708 kb on + strand at 986.714 kb on + strand at 986.774 kb on - strand, within H281DRAFT_00891 at 986.798 kb on + strand, within H281DRAFT_00891 at 986.798 kb on + strand, within H281DRAFT_00891 at 986.965 kb on + strand at 987.104 kb on - strand at 987.231 kb on + strand at 987.231 kb on + strand at 987.231 kb on + strand at 987.232 kb on - strand at 987.240 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 985,222 - H281DRAFT_00888 0.36 +3.3 985,222 - H281DRAFT_00888 0.36 -1.0 985,222 - H281DRAFT_00888 0.36 -1.8 985,392 + H281DRAFT_00888 0.56 +0.4 985,392 + H281DRAFT_00888 0.56 -0.9 985,393 - H281DRAFT_00888 0.57 -0.2 985,740 + -1.0 985,835 + -0.3 986,069 + +0.7 986,493 + +0.4 986,494 - +0.0 986,495 + +0.0 986,537 - +0.9 986,565 + -0.8 986,595 + +0.1 986,599 + -0.6 986,599 + +0.6 986,599 + +0.1 986,599 + -0.3 986,610 - -0.3 986,610 - +0.7 986,708 + -0.1 986,714 + -0.4 986,774 - H281DRAFT_00891 0.18 -0.0 986,798 + H281DRAFT_00891 0.27 -1.2 986,798 + H281DRAFT_00891 0.27 -0.4 986,965 + +0.7 987,104 - +0.0 987,231 + +0.2 987,231 + +0.5 987,231 + -0.3 987,232 - -0.1 987,240 + +2.0
Or see this region's nucleotide sequence