Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00450

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00449 and H281DRAFT_00450 are separated by 30 nucleotidesH281DRAFT_00450 and H281DRAFT_00451 are separated by 115 nucleotides H281DRAFT_00449: H281DRAFT_00449 - Etoposide-induced protein 2.4 (EI24), at 499,340 to 500,173 _00449 H281DRAFT_00450: H281DRAFT_00450 - Predicted nucleotide-utilizing enzyme, at 500,204 to 501,034 _00450 H281DRAFT_00451: H281DRAFT_00451 - Rhodanese-related sulfurtransferase, at 501,150 to 501,614 _00451 Position (kb) 500 501 502Strain fitness (log2 ratio) -2 -1 0 1at 499.626 kb on + strand, within H281DRAFT_00449at 499.761 kb on + strand, within H281DRAFT_00449at 499.761 kb on + strand, within H281DRAFT_00449at 499.761 kb on + strand, within H281DRAFT_00449at 499.762 kb on - strand, within H281DRAFT_00449at 499.762 kb on - strand, within H281DRAFT_00449at 499.762 kb on - strand, within H281DRAFT_00449at 499.869 kb on - strand, within H281DRAFT_00449at 499.869 kb on - strand, within H281DRAFT_00449at 500.020 kb on - strand, within H281DRAFT_00449at 500.054 kb on + strand, within H281DRAFT_00449at 500.054 kb on + strand, within H281DRAFT_00449at 500.054 kb on + strand, within H281DRAFT_00449at 500.055 kb on - strand, within H281DRAFT_00449at 500.055 kb on - strand, within H281DRAFT_00449at 500.055 kb on - strand, within H281DRAFT_00449at 500.094 kb on - strandat 500.096 kb on + strandat 500.097 kb on - strandat 500.188 kb on - strandat 500.324 kb on + strand, within H281DRAFT_00450at 500.325 kb on - strand, within H281DRAFT_00450at 500.325 kb on - strand, within H281DRAFT_00450at 500.325 kb on - strand, within H281DRAFT_00450at 500.325 kb on - strand, within H281DRAFT_00450at 500.326 kb on + strand, within H281DRAFT_00450at 500.326 kb on + strand, within H281DRAFT_00450at 500.431 kb on + strand, within H281DRAFT_00450at 500.522 kb on + strand, within H281DRAFT_00450at 500.522 kb on + strand, within H281DRAFT_00450at 500.523 kb on - strand, within H281DRAFT_00450at 500.523 kb on - strandat 500.523 kb on - strand, within H281DRAFT_00450at 500.585 kb on - strand, within H281DRAFT_00450at 500.585 kb on - strand, within H281DRAFT_00450at 500.627 kb on + strand, within H281DRAFT_00450at 500.664 kb on - strand, within H281DRAFT_00450at 500.664 kb on - strand, within H281DRAFT_00450at 500.726 kb on + strand, within H281DRAFT_00450at 500.727 kb on - strand, within H281DRAFT_00450at 500.784 kb on + strand, within H281DRAFT_00450at 500.891 kb on + strand, within H281DRAFT_00450at 500.892 kb on - strand, within H281DRAFT_00450at 501.099 kb on + strandat 501.109 kb on + strandat 501.109 kb on + strandat 501.250 kb on + strand, within H281DRAFT_00451at 501.250 kb on + strand, within H281DRAFT_00451at 501.250 kb on + strand, within H281DRAFT_00451at 501.260 kb on + strand, within H281DRAFT_00451at 501.335 kb on + strand, within H281DRAFT_00451at 501.421 kb on + strand, within H281DRAFT_00451at 501.422 kb on - strand, within H281DRAFT_00451at 501.422 kb on - strand, within H281DRAFT_00451at 501.593 kb on - strandat 501.593 kb on - strandat 501.603 kb on + strandat 501.604 kb on - strandat 501.604 kb on - strandat 501.604 kb on - strandat 501.645 kb on + strandat 501.743 kb on - strandat 501.945 kb on + strandat 501.958 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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499,626 + H281DRAFT_00449 0.34 +0.1
499,761 + H281DRAFT_00449 0.50 +1.2
499,761 + H281DRAFT_00449 0.50 -0.7
499,761 + H281DRAFT_00449 0.50 -0.0
499,762 - H281DRAFT_00449 0.51 -0.4
499,762 - H281DRAFT_00449 0.51 -0.0
499,762 - H281DRAFT_00449 0.51 +1.1
499,869 - H281DRAFT_00449 0.63 +0.6
499,869 - H281DRAFT_00449 0.63 +0.0
500,020 - H281DRAFT_00449 0.82 -1.7
500,054 + H281DRAFT_00449 0.86 +0.8
500,054 + H281DRAFT_00449 0.86 -2.0
500,054 + H281DRAFT_00449 0.86 -0.4
500,055 - H281DRAFT_00449 0.86 +0.7
500,055 - H281DRAFT_00449 0.86 -0.6
500,055 - H281DRAFT_00449 0.86 +0.1
500,094 - +0.7
500,096 + +0.3
500,097 - +0.1
500,188 - -1.8
500,324 + H281DRAFT_00450 0.14 -1.1
500,325 - H281DRAFT_00450 0.15 +0.5
500,325 - H281DRAFT_00450 0.15 -0.8
500,325 - H281DRAFT_00450 0.15 -1.6
500,325 - H281DRAFT_00450 0.15 -1.3
500,326 + H281DRAFT_00450 0.15 -1.0
500,326 + H281DRAFT_00450 0.15 -2.2
500,431 + H281DRAFT_00450 0.27 -0.9
500,522 + H281DRAFT_00450 0.38 -0.3
500,522 + H281DRAFT_00450 0.38 -1.3
500,523 - H281DRAFT_00450 0.38 -1.3
500,523 - -0.5
500,523 - H281DRAFT_00450 0.38 -0.5
500,585 - H281DRAFT_00450 0.46 -0.6
500,585 - H281DRAFT_00450 0.46 -0.1
500,627 + H281DRAFT_00450 0.51 -0.8
500,664 - H281DRAFT_00450 0.55 -0.7
500,664 - H281DRAFT_00450 0.55 +0.1
500,726 + H281DRAFT_00450 0.63 -1.7
500,727 - H281DRAFT_00450 0.63 +0.3
500,784 + H281DRAFT_00450 0.70 -1.1
500,891 + H281DRAFT_00450 0.83 -0.8
500,892 - H281DRAFT_00450 0.83 -0.7
501,099 + +0.3
501,109 + -0.1
501,109 + -0.2
501,250 + H281DRAFT_00451 0.22 -0.3
501,250 + H281DRAFT_00451 0.22 -1.1
501,250 + H281DRAFT_00451 0.22 -0.2
501,260 + H281DRAFT_00451 0.24 -0.1
501,335 + H281DRAFT_00451 0.40 -0.1
501,421 + H281DRAFT_00451 0.58 -1.3
501,422 - H281DRAFT_00451 0.58 +0.4
501,422 - H281DRAFT_00451 0.58 +0.4
501,593 - +0.6
501,593 - +0.0
501,603 + -1.5
501,604 - -0.6
501,604 - -0.6
501,604 - -0.5
501,645 + -0.5
501,743 - +0.7
501,945 + +0.2
501,958 + -0.2

Or see this region's nucleotide sequence