Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06414 and H281DRAFT_06415 are separated by 890 nucleotides H281DRAFT_06415 and H281DRAFT_06416 are separated by 12 nucleotides H281DRAFT_06416 and H281DRAFT_06417 are separated by 321 nucleotides
H281DRAFT_06414: H281DRAFT_06414 - EamA domain-containing membrane protein RarD, at 13,367 to 14,239
_06414
H281DRAFT_06415: H281DRAFT_06415 - hypothetical protein, at 15,130 to 15,894
_06415
H281DRAFT_06416: H281DRAFT_06416 - Zn-dependent alcohol dehydrogenases, class III, at 15,907 to 16,434
_06416
H281DRAFT_06417: H281DRAFT_06417 - Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family, at 16,756 to 17,805
_06417
Position (kb) 15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.196 kb on + strand at 14.196 kb on + strand at 14.197 kb on - strand at 14.255 kb on - strand at 14.255 kb on - strand at 14.396 kb on + strand at 14.509 kb on - strand at 14.517 kb on - strand at 14.517 kb on - strand at 14.520 kb on + strand at 14.520 kb on + strand at 14.521 kb on - strand at 14.521 kb on - strand at 14.521 kb on - strand at 14.575 kb on + strand at 14.576 kb on - strand at 14.576 kb on - strand at 14.630 kb on - strand at 14.637 kb on + strand at 14.653 kb on + strand at 14.672 kb on + strand at 14.673 kb on - strand at 14.673 kb on - strand at 14.675 kb on + strand at 14.787 kb on + strand at 14.787 kb on + strand at 14.824 kb on - strand at 14.833 kb on - strand at 15.019 kb on + strand at 15.020 kb on - strand at 15.020 kb on - strand at 15.118 kb on + strand at 15.118 kb on + strand at 15.118 kb on + strand at 15.119 kb on - strand at 15.169 kb on + strand at 15.170 kb on - strand at 15.173 kb on + strand at 15.515 kb on + strand, within H281DRAFT_06415 at 15.657 kb on - strand, within H281DRAFT_06415 at 15.694 kb on + strand, within H281DRAFT_06415 at 15.695 kb on - strand, within H281DRAFT_06415 at 15.695 kb on - strand, within H281DRAFT_06415 at 15.695 kb on - strand, within H281DRAFT_06415 at 15.695 kb on - strand, within H281DRAFT_06415 at 15.758 kb on + strand, within H281DRAFT_06415 at 15.759 kb on - strand, within H281DRAFT_06415 at 15.810 kb on + strand, within H281DRAFT_06415 at 15.810 kb on + strand, within H281DRAFT_06415 at 15.811 kb on - strand, within H281DRAFT_06415 at 15.836 kb on - strand at 15.957 kb on + strand at 15.957 kb on + strand at 15.957 kb on + strand at 15.957 kb on + strand at 15.958 kb on - strand at 15.961 kb on - strand, within H281DRAFT_06416 at 15.961 kb on - strand, within H281DRAFT_06416 at 15.961 kb on - strand, within H281DRAFT_06416 at 15.987 kb on + strand, within H281DRAFT_06416 at 16.088 kb on - strand, within H281DRAFT_06416 at 16.101 kb on + strand, within H281DRAFT_06416 at 16.101 kb on + strand, within H281DRAFT_06416 at 16.300 kb on + strand, within H281DRAFT_06416 at 16.300 kb on + strand, within H281DRAFT_06416 at 16.300 kb on + strand, within H281DRAFT_06416 at 16.301 kb on - strand, within H281DRAFT_06416 at 16.301 kb on - strand, within H281DRAFT_06416 at 16.417 kb on + strand at 16.417 kb on + strand at 16.417 kb on + strand at 16.417 kb on + strand at 16.417 kb on + strand at 16.462 kb on + strand at 16.497 kb on + strand at 16.523 kb on + strand at 16.523 kb on + strand at 16.524 kb on - strand at 16.557 kb on + strand at 16.578 kb on + strand at 16.578 kb on + strand at 16.578 kb on + strand at 16.578 kb on + strand at 16.579 kb on - strand at 16.730 kb on - strand at 16.730 kb on - strand at 16.733 kb on + strand at 16.757 kb on + strand at 16.757 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 14,196 + +1.8 14,196 + -1.5 14,197 - -0.9 14,255 - -0.9 14,255 - +0.5 14,396 + -0.6 14,509 - +0.0 14,517 - -1.0 14,517 - -0.3 14,520 + +0.4 14,520 + +0.0 14,521 - -0.6 14,521 - -0.5 14,521 - +0.1 14,575 + -0.6 14,576 - -1.0 14,576 - -0.0 14,630 - +0.3 14,637 + -0.9 14,653 + +0.7 14,672 + -0.1 14,673 - -0.1 14,673 - -0.3 14,675 + +0.2 14,787 + -0.0 14,787 + -2.8 14,824 - -0.3 14,833 - +0.7 15,019 + -0.2 15,020 - +0.5 15,020 - -0.6 15,118 + +0.5 15,118 + +0.5 15,118 + +0.0 15,119 - +0.6 15,169 + +0.2 15,170 - +1.0 15,173 + +0.5 15,515 + H281DRAFT_06415 0.50 -0.0 15,657 - H281DRAFT_06415 0.69 -0.3 15,694 + H281DRAFT_06415 0.74 -0.3 15,695 - H281DRAFT_06415 0.74 -1.5 15,695 - H281DRAFT_06415 0.74 -0.3 15,695 - H281DRAFT_06415 0.74 +0.6 15,695 - H281DRAFT_06415 0.74 +1.0 15,758 + H281DRAFT_06415 0.82 +0.0 15,759 - H281DRAFT_06415 0.82 +0.6 15,810 + H281DRAFT_06415 0.89 +0.6 15,810 + H281DRAFT_06415 0.89 +0.2 15,811 - H281DRAFT_06415 0.89 -0.2 15,836 - +0.4 15,957 + +0.2 15,957 + -1.0 15,957 + -0.0 15,957 + +0.2 15,958 - +0.2 15,961 - H281DRAFT_06416 0.10 +0.6 15,961 - H281DRAFT_06416 0.10 -0.1 15,961 - H281DRAFT_06416 0.10 +0.3 15,987 + H281DRAFT_06416 0.15 -0.2 16,088 - H281DRAFT_06416 0.34 +0.4 16,101 + H281DRAFT_06416 0.37 +0.1 16,101 + H281DRAFT_06416 0.37 -0.2 16,300 + H281DRAFT_06416 0.74 -0.5 16,300 + H281DRAFT_06416 0.74 -0.2 16,300 + H281DRAFT_06416 0.74 -0.4 16,301 - H281DRAFT_06416 0.75 -0.3 16,301 - H281DRAFT_06416 0.75 -0.2 16,417 + -0.1 16,417 + +0.5 16,417 + +0.3 16,417 + -0.3 16,417 + +0.8 16,462 + +0.5 16,497 + -0.5 16,523 + -0.5 16,523 + -0.3 16,524 - +0.2 16,557 + +0.6 16,578 + -0.4 16,578 + -0.3 16,578 + +0.5 16,578 + -1.3 16,579 - -0.6 16,730 - +0.5 16,730 - -0.3 16,733 + -0.1 16,757 + +0.5 16,757 + +0.0
Or see this region's nucleotide sequence