Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06302

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06301 and H281DRAFT_06302 are separated by 209 nucleotidesH281DRAFT_06302 and H281DRAFT_06303 are separated by 152 nucleotidesH281DRAFT_06303 and H281DRAFT_06304 are separated by 30 nucleotides H281DRAFT_06301: H281DRAFT_06301 - L-arabinonolactonase (EC 3.1.1.15), at 84,908 to 85,831 _06301 H281DRAFT_06302: H281DRAFT_06302 - aldose 1-epimerase, at 86,041 to 87,111 _06302 H281DRAFT_06303: H281DRAFT_06303 - orotidine-5'-phosphate decarboxylase, at 87,264 to 88,079 _06303 H281DRAFT_06304: H281DRAFT_06304 - hypothetical protein, at 88,110 to 88,625 _06304 Position (kb) 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2 3at 85.064 kb on + strand, within H281DRAFT_06301at 85.065 kb on - strand, within H281DRAFT_06301at 85.145 kb on + strand, within H281DRAFT_06301at 85.145 kb on + strand, within H281DRAFT_06301at 85.145 kb on + strand, within H281DRAFT_06301at 85.146 kb on - strand, within H281DRAFT_06301at 85.146 kb on - strand, within H281DRAFT_06301at 85.237 kb on + strand, within H281DRAFT_06301at 85.427 kb on + strand, within H281DRAFT_06301at 85.427 kb on + strand, within H281DRAFT_06301at 85.427 kb on + strand, within H281DRAFT_06301at 85.469 kb on + strand, within H281DRAFT_06301at 85.644 kb on + strand, within H281DRAFT_06301at 85.700 kb on + strand, within H281DRAFT_06301at 85.701 kb on - strand, within H281DRAFT_06301at 86.040 kb on + strandat 86.040 kb on + strandat 86.040 kb on + strandat 86.040 kb on + strandat 86.040 kb on + strandat 86.040 kb on + strandat 86.041 kb on - strandat 86.369 kb on - strand, within H281DRAFT_06302at 86.399 kb on - strand, within H281DRAFT_06302at 86.572 kb on + strand, within H281DRAFT_06302at 86.572 kb on + strand, within H281DRAFT_06302at 86.573 kb on - strand, within H281DRAFT_06302at 86.573 kb on - strand, within H281DRAFT_06302at 86.712 kb on - strand, within H281DRAFT_06302at 86.712 kb on - strand, within H281DRAFT_06302at 86.712 kb on - strand, within H281DRAFT_06302at 86.896 kb on + strand, within H281DRAFT_06302at 86.896 kb on + strand, within H281DRAFT_06302at 86.897 kb on - strand, within H281DRAFT_06302at 86.897 kb on - strand, within H281DRAFT_06302at 86.899 kb on + strand, within H281DRAFT_06302at 86.899 kb on + strand, within H281DRAFT_06302at 86.899 kb on + strand, within H281DRAFT_06302at 86.900 kb on - strand, within H281DRAFT_06302at 86.900 kb on - strand, within H281DRAFT_06302at 86.900 kb on - strand, within H281DRAFT_06302at 86.900 kb on - strand, within H281DRAFT_06302at 86.908 kb on + strand, within H281DRAFT_06302at 86.908 kb on + strand, within H281DRAFT_06302at 86.908 kb on + strand, within H281DRAFT_06302at 86.908 kb on + strand, within H281DRAFT_06302at 86.908 kb on + strand, within H281DRAFT_06302at 87.049 kb on - strandat 87.109 kb on + strandat 87.606 kb on + strand, within H281DRAFT_06303at 87.996 kb on + strand, within H281DRAFT_06303at 88.111 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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85,064 + H281DRAFT_06301 0.17 -0.0
85,065 - H281DRAFT_06301 0.17 -0.3
85,145 + H281DRAFT_06301 0.26 -0.0
85,145 + H281DRAFT_06301 0.26 -0.5
85,145 + H281DRAFT_06301 0.26 +0.0
85,146 - H281DRAFT_06301 0.26 -1.1
85,146 - H281DRAFT_06301 0.26 +0.8
85,237 + H281DRAFT_06301 0.36 +0.2
85,427 + H281DRAFT_06301 0.56 +0.4
85,427 + H281DRAFT_06301 0.56 +0.4
85,427 + H281DRAFT_06301 0.56 +0.6
85,469 + H281DRAFT_06301 0.61 +0.9
85,644 + H281DRAFT_06301 0.80 +0.2
85,700 + H281DRAFT_06301 0.86 -0.3
85,701 - H281DRAFT_06301 0.86 -0.2
86,040 + +0.2
86,040 + +0.5
86,040 + +0.6
86,040 + +0.6
86,040 + +0.1
86,040 + +0.7
86,041 - +1.1
86,369 - H281DRAFT_06302 0.31 +0.0
86,399 - H281DRAFT_06302 0.33 -0.0
86,572 + H281DRAFT_06302 0.50 -0.4
86,572 + H281DRAFT_06302 0.50 +0.8
86,573 - H281DRAFT_06302 0.50 -0.1
86,573 - H281DRAFT_06302 0.50 +0.8
86,712 - H281DRAFT_06302 0.63 -0.0
86,712 - H281DRAFT_06302 0.63 +0.7
86,712 - H281DRAFT_06302 0.63 +3.5
86,896 + H281DRAFT_06302 0.80 +0.2
86,896 + H281DRAFT_06302 0.80 +0.0
86,897 - H281DRAFT_06302 0.80 +1.9
86,897 - H281DRAFT_06302 0.80 +0.9
86,899 + H281DRAFT_06302 0.80 +0.0
86,899 + H281DRAFT_06302 0.80 +0.0
86,899 + H281DRAFT_06302 0.80 +0.3
86,900 - H281DRAFT_06302 0.80 -0.5
86,900 - H281DRAFT_06302 0.80 +0.6
86,900 - H281DRAFT_06302 0.80 -0.3
86,900 - H281DRAFT_06302 0.80 -0.2
86,908 + H281DRAFT_06302 0.81 -2.2
86,908 + H281DRAFT_06302 0.81 -0.3
86,908 + H281DRAFT_06302 0.81 -0.4
86,908 + H281DRAFT_06302 0.81 -0.0
86,908 + H281DRAFT_06302 0.81 +0.0
87,049 - -1.3
87,109 + +0.8
87,606 + H281DRAFT_06303 0.42 +0.3
87,996 + H281DRAFT_06303 0.90 -1.5
88,111 + +0.1

Or see this region's nucleotide sequence