Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04712 and H281DRAFT_04713 are separated by 192 nucleotides H281DRAFT_04713 and H281DRAFT_04714 are separated by 108 nucleotides H281DRAFT_04714 and H281DRAFT_04715 are separated by 176 nucleotides H281DRAFT_04715 and H281DRAFT_04716 are separated by 272 nucleotides
H281DRAFT_04712: H281DRAFT_04712 - DNA mismatch repair protein MutL, at 125,265 to 127,310
_04712
H281DRAFT_04713: H281DRAFT_04713 - membrane-associated protein, at 127,503 to 128,168
_04713
H281DRAFT_04714: H281DRAFT_04714 - small conductance mechanosensitive channel, at 128,277 to 129,089
_04714
H281DRAFT_04715: H281DRAFT_04715 - hypothetical protein, at 129,266 to 129,730
_04715
H281DRAFT_04716: H281DRAFT_04716 - tRNA_Lys_TTT, at 130,003 to 130,078
_04716
Position (kb) 128
129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 127.319 kb on + strand at 127.320 kb on - strand at 127.321 kb on + strand at 127.321 kb on + strand at 127.490 kb on + strand at 127.490 kb on + strand at 127.491 kb on - strand at 127.491 kb on - strand at 127.491 kb on - strand at 127.516 kb on + strand at 127.523 kb on - strand at 127.590 kb on + strand, within H281DRAFT_04713 at 127.591 kb on - strand, within H281DRAFT_04713 at 127.591 kb on - strand, within H281DRAFT_04713 at 127.764 kb on + strand, within H281DRAFT_04713 at 127.764 kb on + strand, within H281DRAFT_04713 at 127.765 kb on - strand, within H281DRAFT_04713 at 127.765 kb on - strand, within H281DRAFT_04713 at 127.765 kb on - strand, within H281DRAFT_04713 at 127.765 kb on - strand, within H281DRAFT_04713 at 127.765 kb on - strand, within H281DRAFT_04713 at 128.032 kb on - strand, within H281DRAFT_04713 at 128.046 kb on - strand, within H281DRAFT_04713 at 128.064 kb on + strand, within H281DRAFT_04713 at 128.185 kb on + strand at 128.358 kb on - strand at 128.368 kb on + strand, within H281DRAFT_04714 at 128.368 kb on + strand, within H281DRAFT_04714 at 128.482 kb on - strand, within H281DRAFT_04714 at 128.640 kb on - strand, within H281DRAFT_04714 at 128.649 kb on - strand, within H281DRAFT_04714 at 129.126 kb on - strand at 129.200 kb on + strand at 129.201 kb on - strand at 129.202 kb on + strand at 129.202 kb on + strand at 129.202 kb on + strand at 129.203 kb on - strand at 129.268 kb on - strand at 129.396 kb on + strand, within H281DRAFT_04715 at 129.397 kb on - strand, within H281DRAFT_04715 at 129.565 kb on + strand, within H281DRAFT_04715 at 129.640 kb on + strand, within H281DRAFT_04715 at 129.741 kb on + strand at 129.741 kb on + strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.742 kb on - strand at 129.912 kb on + strand at 129.913 kb on - strand at 129.913 kb on - strand at 129.913 kb on - strand at 129.921 kb on - strand at 129.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 127,319 + -2.2 127,320 - -0.7 127,321 + +0.2 127,321 + -0.0 127,490 + +0.2 127,490 + +0.3 127,491 - -1.6 127,491 - -1.9 127,491 - -0.3 127,516 + -1.5 127,523 - -1.0 127,590 + H281DRAFT_04713 0.13 -0.1 127,591 - H281DRAFT_04713 0.13 -2.4 127,591 - H281DRAFT_04713 0.13 -1.2 127,764 + H281DRAFT_04713 0.39 -1.4 127,764 + H281DRAFT_04713 0.39 -0.9 127,765 - H281DRAFT_04713 0.39 -0.7 127,765 - H281DRAFT_04713 0.39 -0.8 127,765 - H281DRAFT_04713 0.39 -1.6 127,765 - H281DRAFT_04713 0.39 -0.9 127,765 - H281DRAFT_04713 0.39 -0.8 128,032 - H281DRAFT_04713 0.79 +0.5 128,046 - H281DRAFT_04713 0.82 -1.2 128,064 + H281DRAFT_04713 0.84 -0.5 128,185 + +0.1 128,358 - -0.4 128,368 + H281DRAFT_04714 0.11 +0.1 128,368 + H281DRAFT_04714 0.11 +0.5 128,482 - H281DRAFT_04714 0.25 +0.6 128,640 - H281DRAFT_04714 0.45 +0.3 128,649 - H281DRAFT_04714 0.46 -0.3 129,126 - -1.0 129,200 + -0.5 129,201 - +0.1 129,202 + -0.4 129,202 + +1.1 129,202 + +0.3 129,203 - -0.3 129,268 - +1.0 129,396 + H281DRAFT_04715 0.28 +0.1 129,397 - H281DRAFT_04715 0.28 -0.5 129,565 + H281DRAFT_04715 0.64 -0.8 129,640 + H281DRAFT_04715 0.80 -1.1 129,741 + +0.1 129,741 + +0.0 129,742 - -0.2 129,742 - -0.2 129,742 - -0.3 129,742 - -1.6 129,742 - -0.1 129,742 - +2.7 129,742 - -0.9 129,912 + -0.6 129,913 - -1.2 129,913 - -0.6 129,913 - -0.1 129,921 - -0.1 129,970 - +1.0
Or see this region's nucleotide sequence