Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03749 and H281DRAFT_03750 are separated by 63 nucleotides H281DRAFT_03750 and H281DRAFT_03751 are separated by 4 nucleotides H281DRAFT_03751 and H281DRAFT_03752 overlap by 4 nucleotides
H281DRAFT_03749: H281DRAFT_03749 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 265,124 to 266,206
_03749
H281DRAFT_03750: H281DRAFT_03750 - transcriptional regulator, RpiR family, at 266,270 to 267,130
_03750
H281DRAFT_03751: H281DRAFT_03751 - transcriptional regulator, IclR family, at 267,135 to 267,980
_03751
H281DRAFT_03752: H281DRAFT_03752 - transcriptional regulator, IclR family, at 267,977 to 268,834
_03752
Position (kb) 267
268 Strain fitness (log2 ratio) -2
-1
0
1 at 266.165 kb on - strand at 266.165 kb on - strand at 266.516 kb on + strand, within H281DRAFT_03750 at 266.786 kb on + strand, within H281DRAFT_03750 at 266.925 kb on + strand, within H281DRAFT_03750 at 266.941 kb on + strand, within H281DRAFT_03750 at 266.944 kb on - strand, within H281DRAFT_03750 at 266.944 kb on - strand, within H281DRAFT_03750 at 267.099 kb on + strand at 267.487 kb on - strand, within H281DRAFT_03751 at 267.491 kb on - strand, within H281DRAFT_03751 at 267.951 kb on + strand at 268.327 kb on - strand, within H281DRAFT_03752 at 268.420 kb on - strand, within H281DRAFT_03752 at 268.469 kb on - strand, within H281DRAFT_03752 at 268.636 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 266,165 - +0.3 266,165 - +0.1 266,516 + H281DRAFT_03750 0.29 +0.0 266,786 + H281DRAFT_03750 0.60 +0.4 266,925 + H281DRAFT_03750 0.76 -0.2 266,941 + H281DRAFT_03750 0.78 -0.4 266,944 - H281DRAFT_03750 0.78 -0.3 266,944 - H281DRAFT_03750 0.78 -0.1 267,099 + +0.1 267,487 - H281DRAFT_03751 0.42 -0.9 267,491 - H281DRAFT_03751 0.42 -2.2 267,951 + -0.1 268,327 - H281DRAFT_03752 0.41 -1.2 268,420 - H281DRAFT_03752 0.52 -0.6 268,469 - H281DRAFT_03752 0.57 +0.1 268,636 - +1.7
Or see this region's nucleotide sequence