Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03421 and H281DRAFT_03422 are separated by 222 nucleotides H281DRAFT_03422 and H281DRAFT_03423 are separated by 18 nucleotides H281DRAFT_03423 and H281DRAFT_03424 are separated by 88 nucleotides
H281DRAFT_03421: H281DRAFT_03421 - transcriptional regulator, IclR family, at 494,649 to 495,494
_03421
H281DRAFT_03422: H281DRAFT_03422 - dihydroxyacid dehydratase (EC 4.2.1.9), at 495,717 to 497,495
_03422
H281DRAFT_03423: H281DRAFT_03423 - Regulator of RNase E activity RraA, at 497,514 to 498,248
_03423
H281DRAFT_03424: H281DRAFT_03424 - Sugar phosphate permease, at 498,337 to 499,665
_03424
Position (kb) 495
496
497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 495.230 kb on - strand, within H281DRAFT_03421 at 495.240 kb on + strand, within H281DRAFT_03421 at 495.240 kb on + strand, within H281DRAFT_03421 at 495.240 kb on + strand, within H281DRAFT_03421 at 495.344 kb on - strand, within H281DRAFT_03421 at 495.483 kb on - strand at 495.494 kb on + strand at 495.494 kb on + strand at 495.495 kb on - strand at 495.584 kb on + strand at 495.606 kb on + strand at 495.762 kb on + strand at 495.834 kb on + strand at 496.015 kb on - strand, within H281DRAFT_03422 at 496.468 kb on + strand, within H281DRAFT_03422 at 496.469 kb on - strand, within H281DRAFT_03422 at 497.126 kb on + strand, within H281DRAFT_03422 at 498.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 495,230 - H281DRAFT_03421 0.69 -0.1 495,240 + H281DRAFT_03421 0.70 -0.4 495,240 + H281DRAFT_03421 0.70 -0.3 495,240 + H281DRAFT_03421 0.70 -0.7 495,344 - H281DRAFT_03421 0.82 +1.1 495,483 - -0.3 495,494 + -0.3 495,494 + -1.3 495,495 - +0.1 495,584 + +0.9 495,606 + +0.4 495,762 + -3.2 495,834 + -0.9 496,015 - H281DRAFT_03422 0.17 +0.1 496,468 + H281DRAFT_03422 0.42 +0.2 496,469 - H281DRAFT_03422 0.42 +0.4 497,126 + H281DRAFT_03422 0.79 -0.2 498,290 - +0.0
Or see this region's nucleotide sequence